Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016703

Physical Location & Seq

Genomic Coordinates Reverse (-)

62224117 .. 62225582

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG430900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTCTCTCATGTGGTCTTTCTTGACGGTTTTGTTGGCTCTTGTTGTTGTAAACTCTTCTGCTACGGAATTCCAAGTCGGTGATGATTTTGGTTGGCAGCAGCCTGGCTCAAACAACTCCGCTGTCTACTCTAACTGGGCTTCCAACAACAGGTTTCATGTTGGAGATTCACTCTCTTTCAAGTACAAAAATGATTCAGTTCTTCAGGTCGACAAATGGGGGTATTACCACTGCAACACAAGCCATCCCATCATCGCATTTGATAATGGAAAGAGCATAATGAAGCTTGATAGGTCTGGCCCCTTCTACTTCATCAGTGGAGTCCCAGATCATTGCAAAAATGGCCAGCAACTGGTAGTTGAAGTGATGGAACCTCACCCAATTTCGCAATCTCCACAGTCCATTGCTAACTCACCAGAACAGCATTTGGCTGCAGAATCTCCTGCATCCTCACAAAGTTTAGGAGCTGTGATTTCTATTACACCTTGTTCACTTGTTATTGCTTTTCTTGTCACAAGTTTAGCTTTAGTGTGTTCAGCGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

182

Amino Acids

19.74

Weight (kDa)

5.54

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	40 - 117	3.3e-23	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79800
fragaria_vesca	FvH4_6g32140
malus_domestica	MD09G1206100.v1.1
prunus_persica	Prupe.3G061700_v2.0.a1 Prupe.3G062100_v2.0.a1
pyrus_communis	pycom09g12290
rosa_laevigata	RLG00000019843
rosa_roxburghii	Rroxscaffold_2G00105130
rosa_rugosa	Rorug02G0360500
rosa_samantha	Rh2AG411200 Rh2BG421400 Rh2CG397300 Rh2DG430900
rosa_wichuraiana	Rw2G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccI	GTMKAC	2 cut(s)	129, 213
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	153, 355
AgsI	TTSAA	2 cut(s)	184, 365
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	3 cut(s)	289, 470, 527
AluI	AGCT	3 cut(s)	289, 470, 527
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	301, 346
ApeKI	GCWGC	3 cut(s)	100, 103, 434
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	95, 371, 408
BalI	TGGCCA	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	112, 115, 421
BccI	CCATC	3 cut(s)	255, 260, 364
BciT130I	CCWGG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	545
BisI	GCNGC	3 cut(s)	101, 104, 435
BlsI	GCNGC	3 cut(s)	102, 105, 436
Bme1390I	CCNGG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	304, 375
BmrFI	CCNGG	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 355
Bse1I	ACTGG	2 cut(s)	143, 360
Bse3DI	GCAATG	2 cut(s)	334, 405
BseBI	CCWGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	247, 449
BseLI	CCNNNNNNNGG	2 cut(s)	153, 355
BseMI	GCAATG	2 cut(s)	334, 405
BseNI	ACTGG	2 cut(s)	143, 360
BseXI	GCAGC	3 cut(s)	112, 115, 421
BshFI	GGCC	2 cut(s)	303, 348
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	153, 355
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	303, 348
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	303, 348
BspLI	GGNNCC	2 cut(s)	304, 375
BspMAI	CTGCAG	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	334, 405
BsrI	ACTGG	2 cut(s)	143, 360
BssMI	GATC	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	31, 402
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	247, 449
BstH2I	RGCGCY	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 345
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	3 cut(s)	112, 115, 421
BsuRI	GGCC	2 cut(s)	303, 348
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	247, 449
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	232, 325
Cac8I	GCNNGC	1 cut(s)	350
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	13, 161
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	16, 164
FaiI	YATR	4 cut(s)	14, 162, 281, 547
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	12, 160
FblI	GTMKAC	2 cut(s)	129, 213
Fnu4HI	GCNGC	3 cut(s)	101, 104, 435
FokI	GGATG	2 cut(s)	234, 436
Fsp4HI	GCNGC	3 cut(s)	101, 104, 435
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	3 cut(s)	101, 104, 435
HaeII	RGCGCY	1 cut(s)	545
HaeIII	GGCC	2 cut(s)	303, 348
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	2 cut(s)	16, 164
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	170, 197, 324, 440
HphI	GGTGA	3 cut(s)	95, 371, 408
Hpy166II	GTNNAC	4 cut(s)	55, 130, 214, 494
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	4 cut(s)	55, 130, 214, 494
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	31, 402
HpyCH4V	TGCA	4 cut(s)	237, 339, 437, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 345
Hsp92II	CATG	2 cut(s)	16, 164
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	3 cut(s)	112, 115, 421
LweI	GCATC	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	2 cut(s)	51, 197
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	2 cut(s)	71, 384
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	145, 171
MnlI	CCTC	2 cut(s)	387, 463
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	243, 345
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	16, 164
NlaIV	GGNNCC	2 cut(s)	304, 375
NmuCI	GTSAC	1 cut(s)	514
PfeI	GAWTC	3 cut(s)	170, 197, 440
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	102, 105, 436
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	304, 375
PspPI	GGNCC	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	212
SatI	GCNGC	3 cut(s)	101, 104, 435
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	8 cut(s)	158, 213, 291, 299, 379, 472, 490, 529
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	435
Sse9I	AATT	2 cut(s)	71, 384
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	31, 402
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	71, 384
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	3 cut(s)	170, 197, 440
TscAI	CASTG	2 cut(s)	239, 325
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	100, 103, 434
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	149, 299, 304
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	239, 325
Van91I	CCANNNNNTGG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	71
XmiI	GTMKAC	2 cut(s)	129, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.