Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016703

Physical Location & Seq

Genomic Coordinates Forward (+)

19680006 .. 19680999

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1206100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCTTCTTTCTTGTTTCTCTTCCATGCTTCGCTGACGGTCTTCTTGGCCGTCACAAATTGTCCAGTTGAAGCTGCAAAGGAGTTCCGAGTGGGTGATGATTTGGGATGGAGGCAACCCGGCTTGAACGACACGGATGTCTACTCTCAGTGGGCTGCCGGGAAGAGATTTCATGTCGGAGATTCTCTTTCTTTCACATACAAGAATGATTCAGTTCTTGAGGTTGACAAATGGGATTATTACCACTGCAACACAAGCAATCCCATCATCGACTTTGATAACGGCAAGAGCATCATGAAGCTCGATAGGCCTGGCCCTTTCTATTTCATCAGCGGAGCTCCTGATCATTGCAAGAACGGGCAGAGACTTTTTGTCGAGGTGATTGATCTTCCCCCGATCGTGCAGTCTCCTCCACCCTTTGCCGCCCCACCTGAACAATATTTGCCTGACGACTCCCCTGCACCTGCACCCTCGCCAAGCTTAGGCATTGCCATTTCGATTACTCCTTGGTCGCTTGTTATGCCGCTCATCATCACACTTTTGGCTTTAGTAGCGTGCTCCTCAGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

191

Amino Acids

20.89

Weight (kDa)

4.75

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	46 - 121	6.5e-24	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79800
fragaria_vesca	FvH4_6g32140
malus_domestica	MD09G1206100.v1.1
prunus_persica	Prupe.3G061700_v2.0.a1 Prupe.3G062100_v2.0.a1
pyrus_communis	pycom09g12290
rosa_laevigata	RLG00000019843
rosa_roxburghii	Rroxscaffold_2G00105130
rosa_rugosa	Rorug02G0360500
rosa_samantha	Rh2AG411200 Rh2BG421400 Rh2CG397300 Rh2DG430900
rosa_wichuraiana	Rw2G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
AasI	GACNNNNNNGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	472
AccBSI	CCGCTC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	3 cut(s)	333, 423, 524
AcoI	YGGCCR	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	71, 127
AhdI	GACNNNNNGTC	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	74, 301, 338, 480
AluI	AGCT	4 cut(s)	74, 301, 338, 480
Alw21I	GWGCWC	2 cut(s)	340, 560
Alw26I	GTCTC	2 cut(s)	358, 411
AoxI	GGCC	3 cut(s)	48, 308, 313
ApeKI	GCWGC	2 cut(s)	74, 155
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	2 cut(s)	120, 160
AsuHPI	GGTGA	2 cut(s)	107, 391
BanII	GRGCYC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	340, 560
BbvCI	CCTCAGC	1 cut(s)	562
BbvI	GCAGC	2 cut(s)	61, 142
BccI	CCATC	2 cut(s)	102, 272
BceAI	ACGGC	2 cut(s)	35, 298
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	120, 160
BcoDI	GTCTC	2 cut(s)	358, 411
BfaI	CTAG	1 cut(s)	571
BfuAI	ACCTGC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	75, 156, 423, 524
BlsI	GCNGC	4 cut(s)	76, 157, 424, 525
Bme1390I	CCNGG	3 cut(s)	120, 160, 312
BmeRI	GACNNNNNGTC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	314
BmrFI	CCNGG	3 cut(s)	120, 160, 312
BmsI	GCATC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	2 cut(s)	481, 562
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	120, 160
BsaJI	CCNNGG	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	2 cut(s)	346, 486
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	2 cut(s)	113, 142
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	2 cut(s)	346, 486
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	2 cut(s)	399, 550
BseXI	GCAGC	2 cut(s)	61, 142
BsgI	GTGCAG	3 cut(s)	422, 444, 450
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	50, 310, 315
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	340, 560
BsiSI	CCGG	2 cut(s)	120, 159
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	358, 411
BsnI	GGCC	3 cut(s)	50, 310, 315
Bsp1286I	GDGCHC	2 cut(s)	340, 560
Bsp143I	GATC	3 cut(s)	343, 385, 396
BspACI	CCGC	3 cut(s)	333, 423, 524
BspANI	GGCC	3 cut(s)	50, 310, 315
BspCNI	CTCAG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	472
BsrBI	CCGCTC	1 cut(s)	526
BsrDI	GCAATG	2 cut(s)	346, 486
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	3 cut(s)	343, 385, 396
BssT1I	CCWWGG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	26, 158
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	3 cut(s)	147, 481, 562
BstF5I	GGATG	2 cut(s)	113, 142
BstKTI	GATC	3 cut(s)	346, 388, 399
BstMAI	GTCTC	2 cut(s)	358, 411
BstMBI	GATC	3 cut(s)	343, 385, 396
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 307, 520, 551
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	3 cut(s)	118, 158, 310
BstV1I	GCAGC	2 cut(s)	61, 142
BstV2I	GAAGAC	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	50, 310, 315
BtsCI	GGATG	2 cut(s)	113, 142
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	155, 244
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	556
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	314
CviAII	CATG	3 cut(s)	26, 173, 295
DdeI	CTNAG	3 cut(s)	147, 481, 562
DpnI	GATC	3 cut(s)	345, 387, 398
DpnII	GATC	3 cut(s)	343, 385, 396
DrdI	GACNNNNNNGTC	1 cut(s)	137
DriI	GACNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	26, 158
Eam1105I	GACNNNNNGTC	1 cut(s)	371
EarI	CTCTTC	2 cut(s)	26, 158
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	506
Eco147I	AGGCCT	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	3 cut(s)	29, 176, 298
FaiI	YATR	5 cut(s)	27, 174, 199, 296, 521
FatI	CATG	3 cut(s)	25, 172, 294
FbaI	TGATCA	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	75, 156, 423, 524
FokI	GGATG	2 cut(s)	120, 149
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	4 cut(s)	75, 156, 423, 524
FspBI	CTAG	1 cut(s)	571
GluI	GCNGC	4 cut(s)	75, 156, 423, 524
HaeIII	GGCC	3 cut(s)	50, 310, 315
HapII	CCGG	2 cut(s)	120, 159
Hin1II	CATG	3 cut(s)	29, 176, 298
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	3 cut(s)	182, 209, 452
HpaII	CCGG	2 cut(s)	120, 159
HphI	GGTGA	2 cut(s)	107, 391
Hpy166II	GTNNAC	2 cut(s)	142, 226
Hpy188I	TCNGA	2 cut(s)	89, 179
Hpy188III	TCNNGA	3 cut(s)	218, 295, 341
Hpy8I	GTNNAC	2 cut(s)	142, 226
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	6 cut(s)	77, 249, 351, 403, 461, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 307, 520, 551
HpyF3I	CTNAG	3 cut(s)	147, 481, 562
Hsp92II	CATG	3 cut(s)	29, 176, 298
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	343, 385, 396
LmnI	GCTCC	3 cut(s)	335, 343, 563
Lsp1109I	GCAGC	2 cut(s)	61, 142
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	571
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	345, 387, 398
MbiI	CCGCTC	1 cut(s)	526
MboI	GATC	3 cut(s)	343, 385, 396
MboII	GAAGA	4 cut(s)	13, 34, 175, 380
MhlI	GDGCHC	2 cut(s)	340, 560
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	105, 214, 370, 420, 481, 571
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	2 cut(s)	120, 159
MspR9I	CCNGG	3 cut(s)	120, 160, 312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	255, 307, 520, 551
NciI	CCSGG	2 cut(s)	120, 160
NdeII	GATC	3 cut(s)	343, 385, 396
NlaIII	CATG	3 cut(s)	29, 176, 298
NmuCI	GTSAC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	182, 209
PkrI	GCNGC	4 cut(s)	76, 157, 424, 525
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	314
PvuI	CGATCG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	340
SatI	GCNGC	4 cut(s)	75, 156, 423, 524
Sau3AI	GATC	3 cut(s)	343, 385, 396
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	120, 160, 312
SduI	GDGCHC	2 cut(s)	340, 560
SetI	ASST	8 cut(s)	76, 225, 303, 340, 381, 433, 466, 482
SfaNI	GCATC	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	58
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	3 cut(s)	333, 423, 524
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	571
SstI	GAGCTC	1 cut(s)	340
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	118, 158, 310
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	4 cut(s)	270, 303, 375, 497
TasI	AATT	1 cut(s)	58
TauI	GCSGC	2 cut(s)	425, 526
TfiI	GAWTC	2 cut(s)	182, 209
TscAI	CASTG	2 cut(s)	155, 251
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	74, 155
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	161, 311, 316
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	155, 251
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.