Rroxscaffold_2G00105130

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016703
Physical Location & Seq
Forward (+)
28547508 .. 28551276
3769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105130.1

Sequence Viewer

Length: 570 bp
ATGACTTCTTTCATGGTGTTTTTCTTGACGGTTTTCTTGGCTCTTGTTGTTCTAAACTCTTCTGCTGCGGAATTCCAAGTCGGTGGTGATTTTGGTTGGCAGCAGCCTGGCTCAAACAACTCTGCTGTCTACTCTAACTGGGCTTCCAACAACAGGTTTCATGTTGGAGATTCACTCTTTCTGGAGGTCGACAAATGGAGCTATTACCACTGCAACACCAGCCATCCCATCATTGCATTTGATAACGGGAAGAGCATAATGAAGCTCGATAGGTCAGGCCCCTTCTACTTCATCAGTGGAGTCCCAGATCATTGCAAAAATGGCCAGCAACTGGTAGTTGAAGTGATGGAACCTCACCCAATTTCGCAATCTCCACAGTCCATTGCCGACTCACCAGAACCCCATTTGGCTGCAGATTCTCCTGCATCCTCACCAAGTTTAGGAGTTGTGATTTCTAGTACACCTTGTTCACTTGTTATTGCTCTTCTTGTCACAAGTTTAGCTATAGACGAGAGGAGTCTCCATACGAGGAAAATCACGAGCGACGTCAGGATTGACCGCATATTGTGA

Protein Analysis

189

Amino Acids

20.69

Weight (kDa)

5.52

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 109 8.3e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016703)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79800
fragaria_vesca FvH4_6g32140
malus_domestica MD09G1206100.v1.1
prunus_persica Prupe.3G061700_v2.0.a1 Prupe.3G062100_v2.0.a1
pyrus_communis pycom09g12290
rosa_laevigata RLG00000019843
rosa_roxburghii Rroxscaffold_2G00105130
rosa_rugosa Rorug02G0360500
rosa_samantha Rh2AG411200 Rh2BG421400 Rh2CG397300 Rh2DG430900
rosa_wichuraiana Rw2G033680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 549
AccB7I CCANNNNNTGG 1 cut(s) 331
AccI GTMKAC 2 cut(s) 129, 189
AciI CCGC 2 cut(s) 68, 559
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 546
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 3 cut(s) 153, 331, 440
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 3 cut(s) 201, 265, 503
AluI AGCT 3 cut(s) 201, 265, 503
Alw26I GTCTC 1 cut(s) 524
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 2 cut(s) 277, 322
ApeKI GCWGC 4 cut(s) 65, 100, 103, 410
ApoI RAATTY 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 4 cut(s) 98, 347, 384, 423
BalI TGGCCA 1 cut(s) 324
BauI CACGAG 1 cut(s) 538
BbvI GCAGC 4 cut(s) 52, 112, 115, 397
BccI CCATC 3 cut(s) 231, 236, 340
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 2 cut(s) 411, 504
BisI GCNGC 4 cut(s) 66, 101, 104, 411
BlsI GCNGC 4 cut(s) 67, 102, 105, 412
Bme1390I CCNGG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 280, 351
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 434
BmuI ACTGGG 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 159, 191
BpmI CTGGAG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 546
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 331, 440
Bse1I ACTGG 2 cut(s) 143, 336
Bse3DI GCAATG 3 cut(s) 231, 310, 381
BseBI CCWGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 223, 425
BseLI CCNNNNNNNGG 3 cut(s) 153, 331, 440
BseMI GCAATG 3 cut(s) 231, 310, 381
BseNI ACTGG 2 cut(s) 143, 336
BseRI GAGGAG 1 cut(s) 529
BseXI GCAGC 4 cut(s) 52, 112, 115, 397
BshFI GGCC 2 cut(s) 279, 324
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 3 cut(s) 153, 331, 440
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 2 cut(s) 279, 324
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 2 cut(s) 68, 559
BspANI GGCC 2 cut(s) 279, 324
BspLI GGNNCC 2 cut(s) 280, 351
BspMAI CTGCAG 1 cut(s) 415
BspQI GCTCTTC 2 cut(s) 245, 489
BsrDI GCAATG 3 cut(s) 231, 310, 381
BsrI ACTGG 2 cut(s) 143, 336
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 546
BssSI CACGAG 1 cut(s) 538
Bst2BI CACGAG 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 31, 378
Bst6I CTCTTC 3 cut(s) 64, 245, 489
BstACI GRCGYC 1 cut(s) 546
BstC8I GCNNGC 1 cut(s) 326
BstF5I GGATG 2 cut(s) 223, 425
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 219, 321
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 2 cut(s) 411, 504
BstV1I GCAGC 4 cut(s) 52, 112, 115, 397
BstXI CCANNNNNNTGG 1 cut(s) 83
BsuRI GGCC 2 cut(s) 279, 324
BtsCI GGATG 2 cut(s) 223, 425
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 301
Cac8I GCNNGC 1 cut(s) 326
CaiI CAGNNNCTG 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 459
CviAII CATG 2 cut(s) 13, 161
CviQI GTAC 1 cut(s) 459
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 64, 245, 489
EarI CTCTTC 3 cut(s) 64, 245, 489
EcoO109I RGGNCCY 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 16, 164
FaiI YATR 6 cut(s) 14, 162, 257, 506, 525, 563
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 12, 160
FblI GTMKAC 2 cut(s) 129, 189
Fnu4HI GCNGC 4 cut(s) 66, 101, 104, 411
FokI GGATG 2 cut(s) 210, 412
Fsp4HI GCNGC 4 cut(s) 66, 101, 104, 411
FspBI CTAG 1 cut(s) 456
GluI GCNGC 4 cut(s) 66, 101, 104, 411
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 279, 324
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 2 cut(s) 16, 164
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 5 cut(s) 170, 300, 389, 416, 517
HphI GGTGA 4 cut(s) 98, 347, 384, 423
Hpy166II GTNNAC 4 cut(s) 130, 190, 461, 470
Hpy188III TCNNGA 4 cut(s) 25, 182, 538, 550
Hpy8I GTNNAC 4 cut(s) 130, 190, 461, 470
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 31, 378
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 5 cut(s) 213, 236, 315, 413, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 321
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 2 cut(s) 16, 164
Kzo9I GATC 1 cut(s) 307
LguI GCTCTTC 2 cut(s) 245, 489
LmnI GCTCC 1 cut(s) 198
Lsp1109I GCAGC 4 cut(s) 52, 112, 115, 397
LweI GCATC 1 cut(s) 434
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 490
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 51, 262, 476
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 2 cut(s) 71, 360
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 3 cut(s) 309, 383, 526
MmeI TCCRAC 2 cut(s) 145, 171
MnlI CCTC 5 cut(s) 178, 363, 439, 507, 522
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 219, 321
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 16, 164
NlaIV GGNNCC 2 cut(s) 280, 351
NmuCI GTSAC 1 cut(s) 490
PciSI GCTCTTC 2 cut(s) 245, 489
PfeI GAWTC 2 cut(s) 170, 416
PflMI CCANNNNNTGG 1 cut(s) 331
PkrI GCNGC 4 cut(s) 67, 102, 105, 412
PleI GAGTC 3 cut(s) 308, 383, 525
PpsI GAGTC 3 cut(s) 308, 383, 525
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 280, 351
PspPI GGNCC 1 cut(s) 278
PsrI GAACNNNNNNTAC 2 cut(s) 451, 483
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 2 cut(s) 245, 489
SatI GCNGC 4 cut(s) 66, 101, 104, 411
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 3 cut(s) 309, 383, 526
ScrFI CCNGG 1 cut(s) 108
SetI ASST 9 cut(s) 158, 189, 203, 267, 275, 355, 466, 505, 549
SfaNI GCATC 1 cut(s) 434
SfcI CTRYAG 2 cut(s) 411, 504
Sse9I AATT 2 cut(s) 71, 360
SsiI CCGC 2 cut(s) 68, 559
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 31, 378
TaiI ACGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 189, 267
TasI AATT 2 cut(s) 71, 360
TatI WGTACW 1 cut(s) 458
TfiI GAWTC 2 cut(s) 170, 416
TscAI CASTG 2 cut(s) 215, 301
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 4 cut(s) 65, 100, 103, 410
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 3 cut(s) 149, 275, 280
TspRI CASTG 2 cut(s) 215, 301
Van91I CCANNNNNTGG 1 cut(s) 331
XapI RAATTY 1 cut(s) 71
XmiI GTMKAC 2 cut(s) 129, 189
XspI CTAG 1 cut(s) 456
ZraI GACGTC 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.