Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016703

Physical Location & Seq

Genomic Coordinates Forward (+)

4432270 .. 4433215

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G062100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGAGGAACATATCTTATTGTTTCTTTGGTCTTTTCAAAACTTGGTTGACGGTTTTCTTGGCTGTCACAATTTGTTGTGCTGAAGCTGCTGCTACAGAGTTCCAAGCGGGTGATGATTTGGGATGGCAAGAACCTGACTTAAACAACAGCGCTCTGTATACTCAGTGGGCTTCCAGGAACAGATTTCACGTTGGAGATTCTCTCTCTTTCACGTACAAGAGTGATTCAGTTCTTGAGGTTGACAAATGGGATTATTACCACTGCAACACAAGCAATCCCATAATCGCGTTTGATAATGGGAAGAGCATTATGAAACTTGATAGGCCTGGCCCCTTCTATTTTATCCGTGGAGCACATGATCACTGCAAGAATGGCAAGCGGATTTGTATCGAAGTGATGGATCCACGCCTGGTCTCGCTGTCTCCTCCACCTGGTGCAGTCCCACCTGAACCGTATTTGTCCGACTCTCCAAGCTTAGGAGTTGCCATTGCAGTTGCTCCTTGTGCACTTTTTATGGCTCTTATTGTGACATTTTTAGCTTCAGTATGTTCCTCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

188

Amino Acids

20.7

Weight (kDa)

5.75

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79800
fragaria_vesca	FvH4_6g32140
malus_domestica	MD09G1206100.v1.1
prunus_persica	Prupe.3G061700_v2.0.a1 Prupe.3G062100_v2.0.a1
pyrus_communis	pycom09g12290
rosa_laevigata	RLG00000019843
rosa_roxburghii	Rroxscaffold_2G00105130
rosa_rugosa	Rorug02G0360500
rosa_samantha	Rh2AG411200 Rh2BG421400 Rh2CG397300 Rh2DG430900
rosa_wichuraiana	Rw2G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	161
AccII	CGCG	1 cut(s)	290
AciI	CCGC	2 cut(s)	110, 382
AclWI	GGATC	2 cut(s)	398, 411
AcuI	CTGAAG	2 cut(s)	105, 528
AdeI	CACNNNGTG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	218
AfeI	AGCGCT	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	434, 479
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	4 cut(s)	176, 328, 411, 433
AluBI	AGCT	3 cut(s)	89, 477, 542
AluI	AGCT	3 cut(s)	89, 477, 542
Alw21I	GWGCWC	2 cut(s)	358, 511
Alw26I	GTCTC	2 cut(s)	421, 429
Alw44I	GTGCAC	1 cut(s)	507
AlwI	GGATC	2 cut(s)	398, 411
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	2 cut(s)	326, 331
ApaLI	GTGCAC	1 cut(s)	507
ApeKI	GCWGC	2 cut(s)	89, 92
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	125, 549
BaeGI	GKGCMC	1 cut(s)	511
BamHI	GGATCC	1 cut(s)	403
Bbv12I	GWGCWC	2 cut(s)	358, 511
BbvI	GCAGC	2 cut(s)	76, 79
BccI	CCATC	2 cut(s)	120, 394
BciT130I	CCWGG	4 cut(s)	178, 330, 413, 435
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	421, 429
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	2 cut(s)	90, 93
BlsI	GCNGC	2 cut(s)	91, 94
Bme1390I	CCNGG	4 cut(s)	178, 330, 413, 435
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	334, 405
BmrFI	CCNGG	4 cut(s)	178, 330, 413, 435
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 479
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	389
BseBI	CCWGG	4 cut(s)	178, 330, 413, 435
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	434, 479
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	76, 79
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	2 cut(s)	328, 333
BsiHKAI	GWGCWC	2 cut(s)	358, 511
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	434, 479
BsmAI	GTCTC	2 cut(s)	421, 429
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	328, 333
Bso31I	GGTCTC	1 cut(s)	421
Bsp1286I	GDGCHC	2 cut(s)	358, 511
Bsp143I	GATC	2 cut(s)	361, 403
BspACI	CCGC	2 cut(s)	110, 382
BspANI	GGCC	2 cut(s)	328, 333
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	334, 405
BspPI	GGATC	2 cut(s)	398, 411
BspQI	GCTCTTC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	2 cut(s)	361, 403
BssNAI	GTATAC	1 cut(s)	162
Bst1107I	GTATAC	1 cut(s)	162
Bst2UI	CCWGG	4 cut(s)	178, 330, 413, 435
Bst4CI	ACNGT	2 cut(s)	55, 456
Bst6I	CTCTTC	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	2 cut(s)	165, 478
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	364, 406
BstMAI	GTCTC	2 cut(s)	421, 429
BstMBI	GATC	2 cut(s)	361, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 273, 375, 506
BstNI	CCWGG	4 cut(s)	178, 330, 413, 435
BstSCI	CCNGG	4 cut(s)	176, 328, 411, 433
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	76, 79
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZ17I	GTATAC	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	328, 333
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	2 cut(s)	262, 364
BtsIMutI	CAGTG	3 cut(s)	173, 262, 364
Cac8I	GCNNGC	1 cut(s)	380
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	332
CsiI	ACCWGGT	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	8 cut(s)	65, 89, 173, 328, 333, 477, 521, 542
CviKI_1	RGCY	8 cut(s)	65, 89, 173, 328, 333, 477, 521, 542
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	165, 478
DpnI	GATC	2 cut(s)	363, 405
DpnII	GATC	2 cut(s)	361, 403
DraIII	CACNNNGTG	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	421
Eco47III	AGCGCT	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	105, 528
EcoRII	CCWGG	4 cut(s)	176, 328, 411, 433
FaeI	CATG	1 cut(s)	362
FaiI	YATR	8 cut(s)	14, 162, 284, 314, 360, 518, 550, 562
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	90, 93
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	90, 93
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	90, 93
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	328, 333
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	2 cut(s)	51, 244
HindII	GTYRAC	2 cut(s)	51, 244
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	200, 227, 467
HphI	GGTGA	2 cut(s)	125, 549
Hpy166II	GTNNAC	4 cut(s)	51, 162, 244, 509
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	4 cut(s)	51, 162, 244, 509
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	2 cut(s)	55, 456
HpyCH4IV	ACGT	2 cut(s)	192, 215
HpyCH4V	TGCA	5 cut(s)	267, 369, 440, 494, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 273, 375, 506
HpyF3I	CTNAG	2 cut(s)	165, 478
HpySE526I	ACGT	2 cut(s)	192, 215
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	361, 403
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	353, 505
Lsp1109I	GCAGC	2 cut(s)	76, 79
MabI	ACCWGGT	1 cut(s)	433
MaeII	ACGT	2 cut(s)	192, 215
MaeIII	GTNAC	2 cut(s)	67, 529
MalI	GATC	2 cut(s)	363, 405
MboI	GATC	2 cut(s)	361, 403
MboII	GAAGA	2 cut(s)	16, 316
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	358, 511
MluCI	AATT	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	175, 489
MnlI	CCTC	2 cut(s)	232, 438
MseI	TTAA	1 cut(s)	143
MspR9I	CCNGG	4 cut(s)	178, 330, 413, 435
MvaI	CCWGG	4 cut(s)	178, 330, 413, 435
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	89, 273, 375, 506
NdeII	GATC	2 cut(s)	361, 403
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	334, 405
NmuCI	GTSAC	2 cut(s)	67, 529
PceI	AGGCCT	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	200, 227
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	91, 94
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
Ppu21I	YACGTR	1 cut(s)	216
Psp6I	CCWGG	4 cut(s)	176, 328, 411, 433
PspGI	CCWGG	4 cut(s)	176, 328, 411, 433
PspN4I	GGNNCC	2 cut(s)	334, 405
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	90, 93
Sau3AI	GATC	2 cut(s)	361, 403
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	4 cut(s)	178, 330, 413, 435
SduI	GDGCHC	2 cut(s)	358, 511
SetI	ASST	9 cut(s)	91, 139, 195, 218, 243, 436, 451, 479, 544
SexAI	ACCWGGT	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	110, 382
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	4 cut(s)	176, 328, 411, 433
TaaI	ACNGT	2 cut(s)	55, 456
TaiI	ACGT	2 cut(s)	195, 218
TaqI	TCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	200, 227
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	3 cut(s)	173, 269, 371
TseFI	GTSAC	2 cut(s)	67, 529
TseI	GCWGC	2 cut(s)	89, 92
Tsp45I	GTSAC	2 cut(s)	67, 529
TspDTI	ATGAA	2 cut(s)	17, 329
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	173, 269, 371
VneI	GTGCAC	1 cut(s)	507
XmiI	GTMKAC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.