AT1G80140

Belongs to the glycosyl hydrolase 28 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014535
Physical Location & Seq
Forward (+)
30146611 .. 30148180
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80140.1

Sequence Viewer

Length: 1011 bp
ATGGGAAGTGTAAACGTACCAGCAGGGAAGGTGTTCCTCCTCAACTCCCTTCACTTCACGGGTCCTTGCATACCCAAACCTCTCCTTTTCATTATCGATGGAGAGATGATAGCGCAGAGTGATCCACAGAAGTGGGGAAATGGTGAGAACGGGGTAATACCATGGCTCATATTCGATCAAGTAGATGGACTTGCAATCGTAGGGCGCGGCTTGTTGGACGGCCAAGGCAAATCATGGTGGGATATTCATTGTAGAGACCATCCCGGACCCATGATGACATTTAGCAACTGCGGAAATGTAACATTAAAGAGTTTGAGATTTAGAAATAGTGCACAAACACATGTTCTTGTGATGGGAAGCCAAAATGTGTATATCGATGATATCAAAATAACATCACCGGAGGCTAGCCCTAACACCGACGGTATTCACATCACATCTTCCACCGCCGTTTCTATCAATCATTCTGACATCGCCACTGGTGATGATTGTGTGTCGATCGGAGATCAAGTGAATAATTTGAATGTTACTTTTATGAATTGCGGACCTGGTCACGGTGTGAGCATTGGGAGTTTAGGTAGAGGAGGAACAGAGGTAACAGTGGAAAACATACGTGTGTCGCACGTTAACTTCACTGGAACAACAAACGGAGCTCGAATCAAGACTTGGCCTGGAGGAACTGGTTACGTCCGAGGAATCGAGTTCTTCGATATCCGTTTCTCGTCTGTACAAAACCCCATCATCATTGATCAGTTCTACGGTTGTGCCCCTACATGCGTTGAGACTATGAAGGGAGTTCACATAGAGAAAGTGAGATACATGAAGATGAGTGGAACATCGGCGACAAAGGTGGCTATGAAACTCGAGTGTTCAGGGGAGAGTGTTCCATGTTCCAACCTTTTCATGAGAGACATTGACTTATCTCCGGCCGATGGTATTGATTCTGTCTCCTCTCTCTGCTCTTTTGCTCACGGCTCCGCACAAGGCATCATTCGACCTTTATCCTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

336

Amino Acids

36.04

Weight (kDa)

5.9

Isoelectric Point (pI)

23.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 3 - 310 1.1e-76 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80140
fragaria_vesca FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310
prunus_persica Prupe.7G242600_v2.0.a1
pyrus_communis pycom15g15490
rosa_chinensis RchiOBHm_Chr2g0088471
rosa_laevigata RLG00000015957
rosa_roxburghii Rroxscaffold_2G00152660
rosa_rugosa Rorug01G0484300
rosa_samantha Rh2AG039400 Rh2BG038200 Rh2CG039500 Rh2DG038900
rosa_wichuraiana Rw2G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 5 cut(s) 207, 291, 444, 540, 975
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 2 cut(s) 220, 924
AdeI CACNNNGTG 1 cut(s) 556
AfaI GTAC 2 cut(s) 18, 726
AfiI CCNNNNNNNGG 2 cut(s) 551, 929
AflIII ACRYGT 2 cut(s) 340, 610
AgsI TTSAA 1 cut(s) 520
AjnI CCWGG 2 cut(s) 544, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 646, 678
AleI CACNNNNGTG 1 cut(s) 130
AluBI AGCT 1 cut(s) 650
AluI AGCT 1 cut(s) 650
Alw21I GWGCWC 2 cut(s) 334, 652
Alw26I GTCTC 4 cut(s) 249, 773, 900, 949
Alw44I GTGCAC 1 cut(s) 330
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 860
AoxI GGCC 3 cut(s) 220, 665, 924
ApaLI GTGCAC 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 2 cut(s) 115, 207
AspS9I GGNCC 3 cut(s) 62, 266, 542
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 3 cut(s) 155, 387, 491
AsuNHI GCTAGC 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 860
AvaII GGWCC 3 cut(s) 62, 266, 542
BaeGI GKGCMC 2 cut(s) 334, 766
BanII GRGCYC 1 cut(s) 652
Bbv12I GWGCWC 2 cut(s) 334, 652
BccI CCATC 6 cut(s) 92, 179, 267, 346, 743, 923
BceAI ACGGC 3 cut(s) 235, 431, 985
BciT130I CCWGG 2 cut(s) 546, 669
BclI TGATCA 1 cut(s) 745
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 4 cut(s) 249, 773, 900, 949
BfaI CTAG 1 cut(s) 405
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 3 cut(s) 264, 546, 669
Bme18I GGWCC 3 cut(s) 62, 266, 542
BmeT110I CYCGRG 1 cut(s) 860
BmgT120I GGNCC 3 cut(s) 62, 266, 542
BmiI GGNNCC 3 cut(s) 63, 268, 973
BmrFI CCNGG 3 cut(s) 264, 546, 669
BmsI GCATC 1 cut(s) 993
BmtI GCTAGC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 264
Bsa29I ATCGAT 2 cut(s) 96, 375
BsaAI YACGTR 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 161, 223, 688
BsaWI WCCGGW 1 cut(s) 397
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 559, 589
Bsc4I CCNNNNNNNGG 2 cut(s) 551, 929
Bse1I ACTGG 3 cut(s) 481, 637, 682
BseBI CCWGG 2 cut(s) 546, 669
BseCI ATCGAT 2 cut(s) 96, 375
BseDI CCNNGG 3 cut(s) 161, 223, 688
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 551, 929
BseNI ACTGG 3 cut(s) 481, 637, 682
BseRI GAGGAG 3 cut(s) 29, 594, 937
BseSI GKGCMC 2 cut(s) 334, 766
BseX3I CGGCCG 1 cut(s) 924
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 2 cut(s) 498, 927
BshFI GGCC 3 cut(s) 222, 667, 926
BshVI ATCGAT 2 cut(s) 96, 375
BsiEI CGRYCG 2 cut(s) 498, 927
BsiHKAI GWGCWC 2 cut(s) 334, 652
BsiHKCI CYCGRG 1 cut(s) 860
BsiSI CCGG 3 cut(s) 264, 398, 923
BslI CCNNNNNNNGG 2 cut(s) 551, 929
BsmAI GTCTC 4 cut(s) 249, 773, 900, 949
BsnI GGCC 3 cut(s) 222, 667, 926
Bso31I GGTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 860
Bsp1286I GDGCHC 3 cut(s) 334, 652, 766
Bsp1407I TGTACA 1 cut(s) 724
Bsp143I GATC 5 cut(s) 121, 175, 495, 502, 745
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 5 cut(s) 207, 291, 444, 540, 975
BspANI GGCC 3 cut(s) 222, 667, 926
BspDI ATCGAT 2 cut(s) 96, 375
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 3 cut(s) 63, 268, 973
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 249
BsrGI TGTACA 1 cut(s) 724
BsrI ACTGG 3 cut(s) 481, 637, 682
BssECI CCNNGG 3 cut(s) 161, 223, 688
BssMI GATC 5 cut(s) 121, 175, 495, 502, 745
BssT1I CCWWGG 2 cut(s) 161, 223
Bst2UI CCWGG 2 cut(s) 546, 669
Bst4CI ACNGT 4 cut(s) 422, 554, 598, 758
BstAUI TGTACA 1 cut(s) 724
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 406
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 115, 207
BstKTI GATC 5 cut(s) 124, 178, 498, 505, 748
BstMAI GTCTC 4 cut(s) 249, 773, 900, 949
BstMBI GATC 5 cut(s) 121, 175, 495, 502, 745
BstMCI CGRYCG 2 cut(s) 498, 927
BstNI CCWGG 2 cut(s) 546, 669
BstNSI RCATGY 2 cut(s) 344, 774
BstSCI CCNGG 3 cut(s) 262, 544, 667
BstSLI GKGCMC 2 cut(s) 334, 766
BstUI CGCG 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 132
BstZI CGGCCG 1 cut(s) 924
Bsu15I ATCGAT 2 cut(s) 96, 375
BsuRI GGCC 3 cut(s) 222, 667, 926
BsuTUI ATCGAT 2 cut(s) 96, 375
BtgI CCRYGG 1 cut(s) 161
BtgZI GCGATG 1 cut(s) 454
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 3 cut(s) 474, 603, 630
Cac8I GCNNGC 1 cut(s) 406
CciI TCATGA 1 cut(s) 900
CfoI GCGC 2 cut(s) 115, 207
Cfr13I GGNCC 3 cut(s) 62, 266, 542
ClaI ATCGAT 2 cut(s) 96, 375
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 2 cut(s) 17, 725
CviAII CATG 8 cut(s) 162, 234, 271, 341, 771, 817, 885, 901
CviQI GTAC 2 cut(s) 17, 725
DpnI GATC 5 cut(s) 123, 177, 497, 504, 747
DpnII GATC 5 cut(s) 121, 175, 495, 502, 745
DraIII CACNNNGTG 1 cut(s) 556
EaeI YGGCCR 2 cut(s) 220, 924
EagI CGGCCG 1 cut(s) 924
Ecl136II GAGCTC 1 cut(s) 650
EclXI CGGCCG 1 cut(s) 924
Eco130I CCWWGG 2 cut(s) 161, 223
Eco24I GRGCYC 1 cut(s) 652
Eco31I GGTCTC 1 cut(s) 249
Eco32I GATATC 2 cut(s) 382, 709
Eco47I GGWCC 3 cut(s) 62, 266, 542
Eco52I CGGCCG 1 cut(s) 924
Eco53kI GAGCTC 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 860
EcoICRI GAGCTC 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 544, 667
EcoRV GATATC 2 cut(s) 382, 709
EcoT14I CCWWGG 2 cut(s) 161, 223
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 2 cut(s) 161, 223
FaeI CATG 8 cut(s) 165, 237, 274, 344, 774, 820, 888, 904
FatI CATG 8 cut(s) 161, 233, 270, 340, 770, 816, 884, 900
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 1 cut(s) 405
GlaI GCGC 2 cut(s) 114, 206
GluI GCNGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 3 cut(s) 222, 667, 926
HapII CCGG 3 cut(s) 264, 398, 923
HhaI GCGC 2 cut(s) 115, 207
Hin1II CATG 8 cut(s) 165, 237, 274, 344, 774, 820, 888, 904
Hin6I GCGC 2 cut(s) 113, 205
HinP1I GCGC 2 cut(s) 113, 205
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 3 cut(s) 654, 693, 938
HpaI GTTAAC 1 cut(s) 625
HpaII CCGG 3 cut(s) 264, 398, 923
HphI GGTGA 3 cut(s) 155, 387, 491
Hpy166II GTNNAC 4 cut(s) 13, 332, 625, 796
Hpy188I TCNGA 3 cut(s) 466, 500, 689
Hpy188III TCNNGA 2 cut(s) 658, 901
Hpy8I GTNNAC 4 cut(s) 13, 332, 625, 796
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 3 cut(s) 22, 59, 781
HpyCH4III ACNGT 4 cut(s) 422, 554, 598, 758
HpyCH4IV ACGT 4 cut(s) 15, 610, 621, 684
HpyCH4V TGCA 3 cut(s) 69, 194, 332
HpySE526I ACGT 4 cut(s) 15, 610, 621, 684
Hsp92II CATG 8 cut(s) 165, 237, 274, 344, 774, 820, 888, 904
HspAI GCGC 2 cut(s) 113, 205
Ksp22I TGATCA 1 cut(s) 745
KspAI GTTAAC 1 cut(s) 625
Kzo9I GATC 5 cut(s) 121, 175, 495, 502, 745
LmnI GCTCC 2 cut(s) 647, 977
LweI GCATC 1 cut(s) 993
MabI ACCWGGT 1 cut(s) 544
MaeI CTAG 1 cut(s) 405
MaeII ACGT 4 cut(s) 15, 610, 621, 684
MaeIII GTNAC 5 cut(s) 298, 523, 548, 592, 680
MalI GATC 5 cut(s) 123, 177, 497, 504, 747
MboI GATC 5 cut(s) 121, 175, 495, 502, 745
MboII GAAGA 3 cut(s) 429, 694, 832
MhlI GDGCHC 3 cut(s) 334, 652, 766
MluCI AATT 2 cut(s) 514, 535
MmeI TCCRAC 2 cut(s) 195, 915
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 2 cut(s) 305, 624
MslI CAYNNNNRTG 3 cut(s) 130, 611, 821
MspI CCGG 3 cut(s) 264, 398, 923
MspR9I CCNGG 3 cut(s) 264, 546, 669
MvaI CCWGG 2 cut(s) 546, 669
MvnI CGCG 1 cut(s) 207
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 1 cut(s) 161
NdeII GATC 5 cut(s) 121, 175, 495, 502, 745
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 8 cut(s) 165, 237, 274, 344, 774, 820, 888, 904
NlaIV GGNNCC 3 cut(s) 63, 268, 973
NmuCI GTSAC 1 cut(s) 548
NspI RCATGY 2 cut(s) 344, 774
OliI CACNNNNGTG 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 860
PagI TCATGA 1 cut(s) 900
PciI ACATGT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 654, 693, 938
PflFI GACNNNGTC 1 cut(s) 546
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 1 cut(s) 209
Ple19I CGATCG 1 cut(s) 498
Ppu21I YACGTR 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 62
PscI ACATGT 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 652
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 544, 667
PspGI CCWGG 2 cut(s) 544, 667
PspN4I GGNNCC 3 cut(s) 63, 268, 973
PspPI GGNCC 3 cut(s) 62, 266, 542
PspPPI RGGWCCY 1 cut(s) 62
PspXI VCTCGAGB 1 cut(s) 860
PsyI GACNNNGTC 1 cut(s) 546
PvuI CGATCG 1 cut(s) 498
RsaI GTAC 2 cut(s) 18, 726
RsaNI GTAC 2 cut(s) 17, 725
RseI CAYNNNNRTG 3 cut(s) 130, 611, 821
SacI GAGCTC 1 cut(s) 652
SaqAI TTAA 2 cut(s) 305, 624
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 5 cut(s) 121, 175, 495, 502, 745
Sau96I GGNCC 3 cut(s) 62, 266, 542
ScrFI CCNGG 3 cut(s) 264, 546, 669
SduI GDGCHC 3 cut(s) 334, 652, 766
SexAI ACCWGGT 1 cut(s) 544
SfaNI GCATC 1 cut(s) 993
Sfr274I CTCGAG 1 cut(s) 860
SinI GGWCC 3 cut(s) 62, 266, 542
SlaI CTCGAG 1 cut(s) 860
SmiMI CAYNNNNRTG 3 cut(s) 130, 611, 821
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
Sse9I AATT 2 cut(s) 514, 535
SsiI CCGC 5 cut(s) 207, 291, 444, 540, 975
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 1 cut(s) 652
StyD4I CCNGG 3 cut(s) 262, 544, 667
StyI CCWWGG 2 cut(s) 161, 223
TaaI ACNGT 4 cut(s) 422, 554, 598, 758
TaiI ACGT 4 cut(s) 18, 613, 624, 687
TaqI TCGA 9 cut(s) 96, 174, 375, 494, 652, 696, 705, 861, 991
TasI AATT 2 cut(s) 514, 535
TatI WGTACW 1 cut(s) 724
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 3 cut(s) 654, 693, 938
Tru1I TTAA 2 cut(s) 305, 624
Tru9I TTAA 2 cut(s) 305, 624
TscAI CASTG 3 cut(s) 481, 603, 637
TseFI GTSAC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 7 cut(s) 79, 236, 548, 800, 833, 869, 889
TspGWI ACGGA 2 cut(s) 660, 701
TspRI CASTG 3 cut(s) 481, 603, 637
Tth111I GACNNNGTC 1 cut(s) 546
VneI GTGCAC 1 cut(s) 330
VpaK11BI GGWCC 3 cut(s) 62, 266, 542
XceI RCATGY 2 cut(s) 344, 774
XhoI CTCGAG 1 cut(s) 860
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.