Prupe.7G242600_v2.0.a1

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014535
Physical Location & Seq
Reverse (-)
20811034 .. 20813072
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G242600.1

Sequence Viewer

Length: 1125 bp
ATGAGTTTTTATCCACTAATTAATGTCATATCATTGAGATTACAGGCATTCTTGAAGGCATGGAATGCAGCATGCACCTCAGAAACTGAAAATCCTACCTTAATCGTTCCACCGAAGAGATTTCTGCTCAATCCAATCGTTTTCAGCGGTCCATGCAGGGCTAAAAGCATCAATTTTTTGATATTTGGGAGACTTTTGGCACCAGACTCCCCTGGAGCATGGAAGGAGCTTGACCCAAGTCAATGGCTAGCTTTCAATGGTGTAAGCGGTCTCAACATTGCTGGCCCTGGTAGAATCAATGGAAGGGGCAAGGCCTGGTGGGATCAGTCATGCAGAGACCACCCTCGCCTGGTGGGATGCAGTACATTGGCCCCAACTGCAGTGAAGTTGGTGTCGTGTAAAAACAGCAGCATCAGTGAGATTCATTTCCTAAACAGCTCTCAAACCCATGTCCTAATCAGAGACTGTGATGGGATCAACATAGAAAATGTACTGATTGAAGCTCCAGAGAGGAGCCCCAACACTGATGGCATTCACATCTCAGCCTCTCACAATGTGGTTATCACCAACGCCATTATAGGCACCGGTGATGATTGTGTGTCCATTGGAGACCATACATCCAACATAGTCATCTCCTATGTTAAATGCGGTCCGGGTCATGGAATTAGCATTGGAAGCTTAGGGAGGAGTGGGAATTTTGTTCAGGTAGAGAACATTCATGTAAGTAAGGTATACCTCCAAGGAACTACCAACGGAGCTCGGATCAAGACATGGCAGGTCGGCAGAGGCTATGTCCGGCGGGTCACATTTGAGCACATCTTTTTTGGGTCCGTCAAGAACCCCATAATTATCGATCAAAACTACTGCAACAAAAGTGGTGCCTGCAAGGAAATGGAAACTGGGGTTCACATAACTGATGTCTCCTTCAATCAATTGTATGGGACATCTAGTTCCCGTGTAGCTATGAATCTGAATTGCAGTCGCTCAGTTGCTTGCACCAGTATATATTTGAAGTCAATATACCTTAGATCCGCTCTAGCAGGGCAGAACGTGACTTCTAACTGCACCAATGCCCACGGCGTTGCCTCCGGAGTAATTCAACCAGACCCCTGCCTCCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

375

Amino Acids

40.47

Weight (kDa)

8.83

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80140
fragaria_vesca FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310
prunus_persica Prupe.7G242600_v2.0.a1
pyrus_communis pycom15g15490
rosa_chinensis RchiOBHm_Chr2g0088471
rosa_laevigata RLG00000015957
rosa_roxburghii Rroxscaffold_2G00152660
rosa_rugosa Rorug01G0484300
rosa_samantha Rh2AG039400 Rh2BG038200 Rh2CG039500 Rh2DG038900
rosa_wichuraiana Rw2G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 766
AccB1I GGYRCC 3 cut(s) 199, 581, 878
AccBSI CCGCTC 1 cut(s) 1034
AccI GTMKAC 1 cut(s) 732
AccIII TCCGGA 1 cut(s) 1088
AciI CCGC 5 cut(s) 147, 267, 648, 799, 1032
AclWI GGATC 4 cut(s) 330, 482, 770, 1023
AcsI RAATTY 2 cut(s) 694, 1119
AdeI CACNNNGTG 1 cut(s) 556
AfaI GTAC 2 cut(s) 364, 492
AfiI CCNNNNNNNGG 2 cut(s) 349, 659
AgeI ACCGGT 1 cut(s) 584
AgsI TTSAA 6 cut(s) 55, 256, 500, 928, 1012, 1100
AjnI CCWGG 4 cut(s) 211, 286, 314, 348
AloI GAACNNNNNNTCC 2 cut(s) 934, 966
AluBI AGCT 7 cut(s) 229, 251, 438, 503, 678, 758, 962
AluI AGCT 7 cut(s) 229, 251, 438, 503, 678, 758, 962
Alw21I GWGCWC 2 cut(s) 760, 816
Alw26I GTCTC 6 cut(s) 184, 275, 330, 456, 603, 925
AlwI GGATC 4 cut(s) 330, 482, 770, 1023
AlwNI CAGNNNCTG 2 cut(s) 86, 465
Aor13HI TCCGGA 1 cut(s) 1088
AoxI GGCC 3 cut(s) 283, 312, 369
ApeKI GCWGC 2 cut(s) 68, 408
ApoI RAATTY 2 cut(s) 694, 1119
AseI ATTAAT 1 cut(s) 21
AsiGI ACCGGT 1 cut(s) 584
AspS9I GGNCC 5 cut(s) 149, 284, 370, 650, 828
AsuC2I CCSGG 1 cut(s) 654
AsuHPI GGTGA 2 cut(s) 556, 599
AsuNHI GCTAGC 1 cut(s) 247
AvaII GGWCC 3 cut(s) 149, 650, 828
BanI GGYRCC 3 cut(s) 199, 581, 878
BanII GRGCYC 2 cut(s) 518, 760
BarI GAAGNNNNNNTAC 2 cut(s) 1004, 1036
Bbv12I GWGCWC 2 cut(s) 760, 816
BbvI GCAGC 2 cut(s) 80, 420
BccI CCATC 2 cut(s) 464, 521
BceAI ACGGC 1 cut(s) 1093
BciT130I CCWGG 4 cut(s) 213, 288, 316, 350
BcnI CCSGG 1 cut(s) 654
BcoDI GTCTC 6 cut(s) 184, 275, 330, 456, 603, 925
BfaI CTAG 3 cut(s) 248, 948, 1037
BfmI CTRYAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 2 cut(s) 69, 409
BlsI GCNGC 2 cut(s) 70, 410
Bme1390I CCNGG 5 cut(s) 213, 288, 316, 350, 654
Bme18I GGWCC 3 cut(s) 149, 650, 828
BmgT120I GGNCC 5 cut(s) 149, 284, 370, 650, 828
BmiI GGNNCC 6 cut(s) 201, 372, 515, 583, 829, 880
BmrFI CCNGG 5 cut(s) 213, 288, 316, 350, 654
BmrI ACTGGG 1 cut(s) 909
BmsI GCATC 3 cut(s) 177, 347, 420
BmtI GCTAGC 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 909
BoxI GACNNNNGTC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 234, 489
Bpu10I CCTNAGC 1 cut(s) 679
BpuMI CCSGG 1 cut(s) 654
Bsa29I ATCGAT 1 cut(s) 852
BsaI GGTCTC 3 cut(s) 275, 330, 603
BsaJI CCNNGG 4 cut(s) 211, 286, 739, 1075
BsaWI WCCGGW 2 cut(s) 584, 1088
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 659
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 2 cut(s) 904, 999
Bse3DI GCAATG 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 1088
BseBI CCWGG 4 cut(s) 213, 288, 316, 350
BseCI ATCGAT 1 cut(s) 852
BseDI CCNNGG 4 cut(s) 211, 286, 739, 1075
BseGI GGATG 2 cut(s) 362, 617
BseLI CCNNNNNNNGG 2 cut(s) 349, 659
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 93, 555, 999
BseNI ACTGG 2 cut(s) 904, 999
BseRI GAGGAG 2 cut(s) 526, 700
BseXI GCAGC 2 cut(s) 80, 420
BsgI GTGCAG 1 cut(s) 1048
BshFI GGCC 3 cut(s) 285, 314, 371
BshNI GGYRCC 3 cut(s) 199, 581, 878
BshTI ACCGGT 1 cut(s) 584
BshVI ATCGAT 1 cut(s) 852
BsiHKAI GWGCWC 2 cut(s) 760, 816
BsiSI CCGG 4 cut(s) 585, 653, 796, 1089
BslFI GGGAC 1 cut(s) 955
BslI CCNNNNNNNGG 2 cut(s) 349, 659
BsmAI GTCTC 6 cut(s) 184, 275, 330, 456, 603, 925
BsmFI GGGAC 1 cut(s) 955
BsmI GAATGC 3 cut(s) 47, 70, 531
BsnI GGCC 3 cut(s) 285, 314, 371
Bso31I GGTCTC 3 cut(s) 275, 330, 603
Bsp1286I GDGCHC 3 cut(s) 518, 760, 816
Bsp13I TCCGGA 1 cut(s) 1088
Bsp143I GATC 5 cut(s) 322, 474, 762, 853, 1028
BspACI CCGC 5 cut(s) 147, 267, 648, 799, 1032
BspANI GGCC 3 cut(s) 285, 314, 371
BspCNI CTCAG 3 cut(s) 92, 554, 998
BspDI ATCGAT 1 cut(s) 852
BspEI TCCGGA 1 cut(s) 1088
BspLI GGNNCC 6 cut(s) 201, 372, 515, 583, 829, 880
BspMAI CTGCAG 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 766
BspOI GCTAGC 1 cut(s) 251
BspPI GGATC 4 cut(s) 330, 482, 770, 1023
BspT107I GGYRCC 3 cut(s) 199, 581, 878
BspTNI GGTCTC 3 cut(s) 275, 330, 603
BsrBI CCGCTC 1 cut(s) 1034
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 2 cut(s) 904, 999
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 4 cut(s) 211, 286, 739, 1075
BssMI GATC 5 cut(s) 322, 474, 762, 853, 1028
BssNAI GTATAC 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 739
Bst1107I GTATAC 1 cut(s) 733
Bst2UI CCWGG 4 cut(s) 213, 288, 316, 350
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 5 cut(s) 73, 249, 283, 883, 994
BstDEI CTNAG 5 cut(s) 79, 541, 679, 985, 1025
BstDSI CCRYGG 1 cut(s) 1075
BstF5I GGATG 2 cut(s) 362, 617
BstKTI GATC 5 cut(s) 325, 477, 765, 856, 1031
BstMAI GTCTC 6 cut(s) 184, 275, 330, 456, 603, 925
BstMBI GATC 5 cut(s) 322, 474, 762, 853, 1028
BstMWI GCNNNNNNNGC 4 cut(s) 65, 153, 377, 675
BstNI CCWGG 4 cut(s) 213, 288, 316, 350
BstNSI RCATGY 1 cut(s) 75
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 5 cut(s) 211, 286, 314, 348, 652
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 80, 420
BstX2I RGATCY 1 cut(s) 1028
BstXI CCANNNNNNTGG 1 cut(s) 243
BstYI RGATCY 1 cut(s) 1028
BstZ17I GTATAC 1 cut(s) 733
Bsu15I ATCGAT 1 cut(s) 852
BsuRI GGCC 3 cut(s) 285, 314, 371
BsuTUI ATCGAT 1 cut(s) 852
BtgI CCRYGG 1 cut(s) 1075
BtsCI GGATG 2 cut(s) 362, 617
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 3 cut(s) 387, 421, 522
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 5 cut(s) 73, 249, 283, 883, 994
CaiI CAGNNNCTG 2 cut(s) 86, 465
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 5 cut(s) 149, 284, 370, 650, 828
ClaI ATCGAT 1 cut(s) 852
CpoI CGGWCCG 1 cut(s) 650
Csp6I GTAC 2 cut(s) 363, 491
CspAI ACCGGT 1 cut(s) 584
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CspI CGGWCCG 1 cut(s) 650
CviAII CATG 9 cut(s) 60, 72, 153, 219, 330, 449, 659, 719, 771
CviQI GTAC 2 cut(s) 363, 491
DdeI CTNAG 5 cut(s) 79, 541, 679, 985, 1025
DpnI GATC 5 cut(s) 324, 476, 764, 855, 1030
DpnII GATC 5 cut(s) 322, 474, 762, 853, 1028
DraIII CACNNNGTG 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 739
Eco147I AGGCCT 1 cut(s) 314
Eco24I GRGCYC 2 cut(s) 518, 760
Eco31I GGTCTC 3 cut(s) 275, 330, 603
Eco47I GGWCC 3 cut(s) 149, 650, 828
Eco53kI GAGCTC 1 cut(s) 758
EcoICRI GAGCTC 1 cut(s) 758
EcoRII CCWGG 4 cut(s) 211, 286, 314, 348
EcoT14I CCWWGG 1 cut(s) 739
EcoT38I GRGCYC 2 cut(s) 518, 760
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 9 cut(s) 63, 75, 156, 222, 333, 452, 662, 722, 774
FaqI GGGAC 1 cut(s) 955
FatI CATG 9 cut(s) 59, 71, 152, 218, 329, 448, 658, 718, 770
FauI CCCGC 1 cut(s) 792
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 2 cut(s) 69, 409
FokI GGATG 2 cut(s) 369, 604
FriOI GRGCYC 2 cut(s) 518, 760
Fsp4HI GCNGC 2 cut(s) 69, 409
FspBI CTAG 3 cut(s) 248, 948, 1037
GluI GCNGC 2 cut(s) 69, 409
GsuI CTGGAG 2 cut(s) 234, 489
HaeIII GGCC 3 cut(s) 285, 314, 371
HapII CCGG 4 cut(s) 585, 653, 796, 1089
Hin1II CATG 9 cut(s) 63, 75, 156, 222, 333, 452, 662, 722, 774
HindIII AAGCTT 1 cut(s) 676
HinfI GANTC 4 cut(s) 206, 294, 421, 967
HpaII CCGG 4 cut(s) 585, 653, 796, 1089
HphI GGTGA 2 cut(s) 556, 599
Hpy166II GTNNAC 2 cut(s) 733, 907
Hpy188I TCNGA 4 cut(s) 82, 461, 762, 972
Hpy188III TCNNGA 5 cut(s) 52, 506, 766, 835, 1089
Hpy8I GTNNAC 2 cut(s) 733, 907
HpyAV CCTTC 4 cut(s) 49, 217, 297, 934
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 1 cut(s) 1050
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 153, 377, 675
HpyF3I CTNAG 5 cut(s) 79, 541, 679, 985, 1025
HpySE526I ACGT 1 cut(s) 1050
Hsp92II CATG 9 cut(s) 63, 75, 156, 222, 333, 452, 662, 722, 774
Kpn2I TCCGGA 1 cut(s) 1088
Kzo9I GATC 5 cut(s) 322, 474, 762, 853, 1028
LmnI GCTCC 5 cut(s) 215, 226, 508, 513, 755
Lsp1109I GCAGC 2 cut(s) 80, 420
LweI GCATC 3 cut(s) 177, 347, 420
MaeI CTAG 3 cut(s) 248, 948, 1037
MaeII ACGT 1 cut(s) 1050
MaeIII GTNAC 2 cut(s) 802, 1051
MalI GATC 5 cut(s) 324, 476, 764, 855, 1030
MbiI CCGCTC 1 cut(s) 1034
MboI GATC 5 cut(s) 322, 474, 762, 853, 1028
MboII GAAGA 1 cut(s) 127
MfeI CAATTG 1 cut(s) 932
MflI RGATCY 1 cut(s) 1028
MhlI GDGCHC 3 cut(s) 518, 760, 816
MluCI AATT 9 cut(s) 18, 172, 663, 694, 846, 932, 973, 1095, 1119
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 9 cut(s) 88, 354, 504, 556, 678, 746, 779, 1096, 1124
MroI TCCGGA 1 cut(s) 1088
MseI TTAA 3 cut(s) 21, 101, 642
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 4 cut(s) 585, 653, 796, 1089
MspR9I CCNGG 5 cut(s) 213, 288, 316, 350, 654
MunI CAATTG 1 cut(s) 932
Mva1269I GAATGC 3 cut(s) 47, 70, 531
MvaI CCWGG 4 cut(s) 213, 288, 316, 350
MwoI GCNNNNNNNGC 4 cut(s) 65, 153, 377, 675
NciI CCSGG 1 cut(s) 654
NdeII GATC 5 cut(s) 322, 474, 762, 853, 1028
NheI GCTAGC 1 cut(s) 247
NlaIII CATG 9 cut(s) 63, 75, 156, 222, 333, 452, 662, 722, 774
NlaIV GGNNCC 6 cut(s) 201, 372, 515, 583, 829, 880
NmuCI GTSAC 2 cut(s) 802, 1051
NspI RCATGY 1 cut(s) 75
PaeI GCATGC 1 cut(s) 75
PceI AGGCCT 1 cut(s) 314
PctI GAATGC 3 cut(s) 47, 70, 531
PfeI GAWTC 3 cut(s) 294, 421, 967
PinAI ACCGGT 1 cut(s) 584
PkrI GCNGC 2 cut(s) 70, 410
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PshAI GACNNNNGTC 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 760
Psp6I CCWGG 4 cut(s) 211, 286, 314, 348
PspGI CCWGG 4 cut(s) 211, 286, 314, 348
PspN4I GGNNCC 6 cut(s) 201, 372, 515, 583, 829, 880
PspPI GGNCC 5 cut(s) 149, 284, 370, 650, 828
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 2 cut(s) 86, 465
PsuI RGATCY 1 cut(s) 1028
RsaI GTAC 2 cut(s) 364, 492
RsaNI GTAC 2 cut(s) 363, 491
Rsr2I CGGWCCG 1 cut(s) 650
RsrII CGGWCCG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 760
SaqAI TTAA 3 cut(s) 21, 101, 642
SatI GCNGC 2 cut(s) 69, 409
Sau3AI GATC 5 cut(s) 322, 474, 762, 853, 1028
Sau96I GGNCC 5 cut(s) 149, 284, 370, 650, 828
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 5 cut(s) 213, 288, 316, 350, 654
SduI GDGCHC 3 cut(s) 518, 760, 816
SfaNI GCATC 3 cut(s) 177, 347, 420
SfcI CTRYAG 1 cut(s) 378
SgrAI CRCCGGYG 1 cut(s) 584
SinI GGWCC 3 cut(s) 149, 650, 828
SphI GCATGC 1 cut(s) 75
Sse9I AATT 9 cut(s) 18, 172, 663, 694, 846, 932, 973, 1095, 1119
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 5 cut(s) 147, 267, 648, 799, 1032
SspMI CTAG 3 cut(s) 248, 948, 1037
SstI GAGCTC 1 cut(s) 760
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 5 cut(s) 211, 286, 314, 348, 652
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 1 cut(s) 1053
TaqI TCGA 1 cut(s) 852
TasI AATT 9 cut(s) 18, 172, 663, 694, 846, 932, 973, 1095, 1119
TatI WGTACW 2 cut(s) 362, 490
TfiI GAWTC 3 cut(s) 294, 421, 967
Tru1I TTAA 3 cut(s) 21, 101, 642
Tru9I TTAA 3 cut(s) 21, 101, 642
TscAI CASTG 3 cut(s) 387, 421, 529
TseFI GTSAC 2 cut(s) 802, 1051
TseI GCWGC 2 cut(s) 68, 408
Tsp45I GTSAC 2 cut(s) 802, 1051
TspDTI ATGAA 3 cut(s) 413, 707, 980
TspGWI ACGGA 2 cut(s) 768, 820
TspRI CASTG 3 cut(s) 387, 421, 529
VpaK11BI GGWCC 3 cut(s) 149, 650, 828
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 2 cut(s) 694, 1119
XceI RCATGY 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 732
XspI CTAG 3 cut(s) 248, 948, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.