FvH4_1g03310

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014535
Physical Location & Seq
Forward (+)
1822363 .. 1825595
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03310.t1

Sequence Viewer

Length: 1227 bp
ATGGGGAGCTATCTTTTTCTAGTTTTTCTTGGGATAGTTTATGTGATTACTGCATCTTCAGAACATGAACATGCAAACACAACAAGGGCTACTTTTAATGTCTTGGACTATGGAGCTGTCAGTGGTCGACACACAGACAGTGGCATGGCATTCTGGGAAGCATGGAACGCAACATGTAGCTCAGAAGCTGAAAACTCAACTCTAATCATTCCCAGAATGAGATTTCTGTTAAGTCCAATCACTTTCGATGGTCCATGCAAACCTCAAAGAATCAAAATTTTGATATTAGGGAGACTTTTGGCACCAGAGTCACCTGAAGCATGGAGGGACTTTGATCCAGGTCAATGGCTAGCTTTTCGTGGTGTTAATGGACTCGAAATTGCTGGCCCTGGTACTATTAATGGAAGAGGAAGCGGCTGGTGGAATCAATCTTGCAGATATCATCCCAAACTGGAGGGATGCACTACACTGGCTCCAACAGCTTTGAAGGTTCTGTCATGCAAGAATATCTGGCTTAGAGATATTCACTTCATAAACAGCTCCCAATCTCATATCTTAATAGAGGGATGTGACGGAATCAAGATTGAGAATCTTATGATTGAGGCTCCAGGAAATAGTCCCAACACTGATGGGATTCACATTCATGCATCTCACAATGTCATTATCAACAACACCATCATAGCCTCTGGTGATGATTGCATATCAATTGGAGACCATATATCCAATATAGCCATCTCATATATTAAATGTGGCCCTGGTCATGGAATAAGCATTGGAAGCCTAGGGAAATCCGGGAATGTGGTTCAGGTAGAGAACGTTCATGTCAGCAAGGTCACCCTCCAAGGAACTACGAACGGAGCTCGGATCAAGACATGGCAGGTTGGCCAGGGTAATGTTCGAGGGGTCAGATTCGAAGATTTCTTCCTGGACTCTGTTAAGAACCCCATCATTATCGATCAGAACTACTGCAAAGTTAGGGGTGCCTGCGAGGAACTGCCCACTGGTGTTCACATAAGTGATGTCTCCTTCAAAAACTTCTATGGAACGTCGAGTACGAATATCGCCATCAATCTGAATTGCAGCCTCTCGGTTCCTTGCACAGAAATATTGATGAAGTCGATATACCTTCGATCTGCTATAGCTGGACAGAATGTAACTTCTAGCTGCAGAAATGCCTACGGCATTGCCTTTGGAGTAGTTCATCCAAGCCCTTGTTTCCAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

409

Amino Acids

44.34

Weight (kDa)

6.9

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 62 - 392 1.2e-85 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80140
fragaria_vesca FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310
prunus_persica Prupe.7G242600_v2.0.a1
pyrus_communis pycom15g15490
rosa_chinensis RchiOBHm_Chr2g0088471
rosa_laevigata RLG00000015957
rosa_roxburghii Rroxscaffold_2G00152660
rosa_rugosa Rorug01G0484300
rosa_samantha Rh2AG039400 Rh2BG038200 Rh2CG039500 Rh2DG038900
rosa_wichuraiana Rw2G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 868
AccB1I GGYRCC 2 cut(s) 301, 980
AccI GTMKAC 1 cut(s) 127
AciI CCGC 1 cut(s) 414
AclI AACGTT 1 cut(s) 816
AclWI GGATC 2 cut(s) 329, 872
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 2 cut(s) 42, 336
AfaI GTAC 2 cut(s) 394, 1054
AfiI CCNNNNNNNGG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 2 cut(s) 487, 1030
AjnI CCWGG 6 cut(s) 337, 388, 607, 754, 885, 924
AleI CACNNNNGTG 1 cut(s) 1014
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 3 cut(s) 286, 705, 1027
AlwI GGATC 2 cut(s) 329, 872
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 3 cut(s) 385, 751, 883
ApeKI GCWGC 2 cut(s) 1080, 1164
ApoI RAATTY 1 cut(s) 276
AseI ATTAAT 1 cut(s) 399
AspA2I CCTAGG 1 cut(s) 781
AspS9I GGNCC 3 cut(s) 251, 386, 752
AsuC2I CCSGG 1 cut(s) 793
AsuHPI GGTGA 3 cut(s) 303, 701, 826
AsuII TTCGAA 1 cut(s) 912
AsuNHI GCTAGC 1 cut(s) 349
AvaII GGWCC 1 cut(s) 251
AvrII CCTAGG 1 cut(s) 781
BalI TGGCCA 1 cut(s) 885
BanI GGYRCC 2 cut(s) 301, 980
BanII GRGCYC 1 cut(s) 862
BarI GAAGNNNNNNTAC 2 cut(s) 1106, 1138
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 2 cut(s) 1092, 1151
BccI CCATC 6 cut(s) 242, 623, 683, 740, 953, 1073
BceAI ACGGC 1 cut(s) 1195
BciT130I CCWGG 6 cut(s) 339, 390, 609, 756, 887, 926
BcnI CCSGG 1 cut(s) 793
BcoDI GTCTC 3 cut(s) 286, 705, 1027
BfaI CTAG 4 cut(s) 20, 350, 782, 1161
BfmI CTRYAG 2 cut(s) 1137, 1165
BfuAI ACCTGC 1 cut(s) 868
BisI GCNGC 3 cut(s) 415, 1081, 1165
BlnI CCTAGG 1 cut(s) 781
BlsI GCNGC 3 cut(s) 416, 1082, 1166
Bme1390I CCNGG 7 cut(s) 339, 390, 609, 756, 793, 887, 926
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 251, 386, 752
BmiI GGNNCC 5 cut(s) 303, 474, 606, 982, 1092
BmrFI CCNGG 7 cut(s) 339, 390, 609, 756, 793, 887, 926
BmsI GCATC 3 cut(s) 62, 449, 656
BmtI GCTAGC 1 cut(s) 353
BpmI CTGGAG 2 cut(s) 473, 591
Bpu14I TTCGAA 1 cut(s) 912
BpuMI CCSGG 1 cut(s) 793
Bsa29I ATCGAT 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 705
BsaJI CCNNGG 5 cut(s) 388, 754, 781, 841, 886
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 3 cut(s) 456, 474, 1006
Bse3DI GCAATG 1 cut(s) 1182
BseBI CCWGG 6 cut(s) 339, 390, 609, 756, 887, 926
BseCI ATCGAT 1 cut(s) 954
BseDI CCNNGG 5 cut(s) 388, 754, 781, 841, 886
BseGI GGATG 4 cut(s) 442, 464, 572, 1201
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 1 cut(s) 1182
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 3 cut(s) 456, 474, 1006
BseXI GCAGC 2 cut(s) 1092, 1151
BshFI GGCC 3 cut(s) 387, 753, 885
BshNI GGYRCC 2 cut(s) 301, 980
BshVI ATCGAT 1 cut(s) 954
BsiHKAI GWGCWC 1 cut(s) 862
BsiSI CCGG 1 cut(s) 792
BslFI GGGAC 2 cut(s) 341, 603
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 3 cut(s) 286, 705, 1027
BsmFI GGGAC 2 cut(s) 341, 603
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 3 cut(s) 387, 753, 885
Bso31I GGTCTC 1 cut(s) 705
Bsp119I TTCGAA 1 cut(s) 912
Bsp1286I GDGCHC 1 cut(s) 862
Bsp143I GATC 4 cut(s) 334, 864, 955, 1130
BspACI CCGC 1 cut(s) 414
BspANI GGCC 3 cut(s) 387, 753, 885
BspCNI CTCAG 1 cut(s) 194
BspDI ATCGAT 1 cut(s) 954
BspLI GGNNCC 5 cut(s) 303, 474, 606, 982, 1092
BspMAI CTGCAG 1 cut(s) 1169
BspMI ACCTGC 1 cut(s) 868
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 329, 872
BspT104I TTCGAA 1 cut(s) 912
BspT107I GGYRCC 2 cut(s) 301, 980
BspTNI GGTCTC 1 cut(s) 705
BsrDI GCAATG 1 cut(s) 1182
BsrI ACTGG 3 cut(s) 456, 474, 1006
BssECI CCNNGG 5 cut(s) 388, 754, 781, 841, 886
BssMI GATC 4 cut(s) 334, 864, 955, 1130
BssT1I CCWWGG 2 cut(s) 781, 841
Bst2UI CCWGG 6 cut(s) 339, 390, 609, 756, 887, 926
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 400
BstBI TTCGAA 1 cut(s) 912
BstC8I GCNNGC 3 cut(s) 351, 385, 985
BstDEI CTNAG 2 cut(s) 181, 515
BstEII GGTNACC 1 cut(s) 832
BstF5I GGATG 4 cut(s) 442, 464, 572, 1201
BstKTI GATC 4 cut(s) 337, 867, 958, 1133
BstMAI GTCTC 3 cut(s) 286, 705, 1027
BstMBI GATC 4 cut(s) 334, 864, 955, 1130
BstMWI GCNNNNNNNGC 3 cut(s) 167, 479, 777
BstNI CCWGG 6 cut(s) 339, 390, 609, 756, 887, 926
BstNSI RCATGY 2 cut(s) 74, 177
BstPI GGTNACC 1 cut(s) 832
BstSCI CCNGG 7 cut(s) 337, 388, 607, 754, 791, 885, 924
BstSFI CTRYAG 2 cut(s) 1137, 1165
BstV1I GCAGC 2 cut(s) 1092, 1151
BstXI CCANNNNNNTGG 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 954
BsuRI GGCC 3 cut(s) 387, 753, 885
BsuTUI ATCGAT 1 cut(s) 954
BtsCI GGATG 4 cut(s) 442, 464, 572, 1201
BtsIMutI CAGTG 5 cut(s) 127, 145, 467, 624, 999
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 3 cut(s) 351, 385, 985
CaiI CAGNNNCTG 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 251, 386, 752
ClaI ATCGAT 1 cut(s) 954
Csp6I GTAC 2 cut(s) 393, 1053
CviQI GTAC 2 cut(s) 393, 1053
DdeI CTNAG 2 cut(s) 181, 515
DpnI GATC 4 cut(s) 336, 866, 957, 1132
DpnII GATC 4 cut(s) 334, 864, 955, 1130
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Ecl136II GAGCTC 1 cut(s) 860
Eco130I CCWWGG 2 cut(s) 781, 841
Eco24I GRGCYC 1 cut(s) 862
Eco31I GGTCTC 1 cut(s) 705
Eco32I GATATC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 860
Eco57I CTGAAG 2 cut(s) 42, 336
Eco91I GGTNACC 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 860
EcoO65I GGTNACC 1 cut(s) 832
EcoRII CCWGG 6 cut(s) 337, 388, 607, 754, 885, 924
EcoRV GATATC 1 cut(s) 440
EcoT14I CCWWGG 2 cut(s) 781, 841
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 862
ErhI CCWWGG 2 cut(s) 781, 841
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 2 cut(s) 341, 603
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 415, 1081, 1165
FokI GGATG 4 cut(s) 429, 471, 579, 1188
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 3 cut(s) 415, 1081, 1165
FspBI CTAG 4 cut(s) 20, 350, 782, 1161
GluI GCNGC 3 cut(s) 415, 1081, 1165
GsuI CTGGAG 2 cut(s) 473, 591
HaeIII GGCC 3 cut(s) 387, 753, 885
HapII CCGG 1 cut(s) 792
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 9 cut(s) 270, 308, 372, 424, 576, 589, 634, 909, 929
HpaII CCGG 1 cut(s) 792
HphI GGTGA 3 cut(s) 303, 701, 826
Hpy166II GTNNAC 2 cut(s) 128, 1009
Hpy188I TCNGA 7 cut(s) 61, 184, 864, 908, 960, 1074, 1226
Hpy188III TCNNGA 2 cut(s) 580, 868
Hpy8I GTNNAC 2 cut(s) 128, 1009
Hpy99I CGWCG 1 cut(s) 1051
HpyAV CCTTC 3 cut(s) 481, 1036, 1136
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 816, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 479, 777
HpyF3I CTNAG 2 cut(s) 181, 515
HpySE526I ACGT 2 cut(s) 816, 1046
Kzo9I GATC 4 cut(s) 334, 864, 955, 1130
LmnI GCTCC 6 cut(s) 6, 113, 478, 545, 610, 857
Lsp1109I GCAGC 2 cut(s) 1092, 1151
LweI GCATC 3 cut(s) 62, 449, 656
MaeI CTAG 4 cut(s) 20, 350, 782, 1161
MaeII ACGT 2 cut(s) 816, 1046
MaeIII GTNAC 4 cut(s) 309, 569, 832, 1153
MalI GATC 4 cut(s) 336, 866, 957, 1132
MboI GATC 4 cut(s) 334, 864, 955, 1130
MboII GAAGA 4 cut(s) 48, 417, 913, 926
MfeI CAATTG 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 862
MlsI TGGCCA 1 cut(s) 885
MluCI AATT 4 cut(s) 276, 378, 705, 1075
MluNI TGGCCA 1 cut(s) 885
MlyI GAGTC 3 cut(s) 317, 366, 923
MmeI TCCRAC 1 cut(s) 500
Mox20I TGGCCA 1 cut(s) 885
Mph1103I ATGCAT 1 cut(s) 649
MscI TGGCCA 1 cut(s) 885
MseI TTAA 7 cut(s) 96, 230, 366, 399, 557, 744, 936
MslI CAYNNNNRTG 3 cut(s) 69, 642, 1014
Msp20I TGGCCA 1 cut(s) 885
MspI CCGG 1 cut(s) 792
MspR9I CCNGG 7 cut(s) 339, 390, 609, 756, 793, 887, 926
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 6 cut(s) 339, 390, 609, 756, 887, 926
MwoI GCNNNNNNNGC 3 cut(s) 167, 479, 777
NciI CCSGG 1 cut(s) 793
NdeII GATC 4 cut(s) 334, 864, 955, 1130
NheI GCTAGC 1 cut(s) 349
NlaIV GGNNCC 5 cut(s) 303, 474, 606, 982, 1092
NmuCI GTSAC 3 cut(s) 309, 569, 832
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 2 cut(s) 74, 177
NspV TTCGAA 1 cut(s) 912
OliI CACNNNNGTG 1 cut(s) 1014
PciI ACATGT 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 1052
PctI GAATGC 1 cut(s) 149
PfeI GAWTC 6 cut(s) 270, 424, 576, 589, 634, 909
PfoI TCCNGGA 3 cut(s) 607, 791, 924
PkrI GCNGC 3 cut(s) 416, 1082, 1166
PleI GAGTC 3 cut(s) 316, 366, 923
PpsI GAGTC 3 cut(s) 316, 366, 923
PscI ACATGT 1 cut(s) 173
PshBI ATTAAT 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 862
Psp1406I AACGTT 1 cut(s) 816
Psp6I CCWGG 6 cut(s) 337, 388, 607, 754, 885, 924
PspEI GGTNACC 1 cut(s) 832
PspGI CCWGG 6 cut(s) 337, 388, 607, 754, 885, 924
PspN4I GGNNCC 5 cut(s) 303, 474, 606, 982, 1092
PspPI GGNCC 3 cut(s) 251, 386, 752
PsrI GAACNNNNNNTAC 4 cut(s) 801, 833, 1036, 1068
PstI CTGCAG 1 cut(s) 1169
PstNI CAGNNNCTG 1 cut(s) 188
RsaI GTAC 2 cut(s) 394, 1054
RsaNI GTAC 2 cut(s) 393, 1053
RseI CAYNNNNRTG 3 cut(s) 69, 642, 1014
SacI GAGCTC 1 cut(s) 862
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 7 cut(s) 96, 230, 366, 399, 557, 744, 936
SatI GCNGC 3 cut(s) 415, 1081, 1165
Sau3AI GATC 4 cut(s) 334, 864, 955, 1130
Sau96I GGNCC 3 cut(s) 251, 386, 752
SchI GAGTC 3 cut(s) 317, 366, 923
ScrFI CCNGG 7 cut(s) 339, 390, 609, 756, 793, 887, 926
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 3 cut(s) 62, 449, 656
SfcI CTRYAG 2 cut(s) 1137, 1165
SfuI TTCGAA 1 cut(s) 912
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 3 cut(s) 69, 642, 1014
Sse9I AATT 4 cut(s) 276, 378, 705, 1075
SsiI CCGC 1 cut(s) 414
SspI AATATT 1 cut(s) 1107
SspMI CTAG 4 cut(s) 20, 350, 782, 1161
SstI GAGCTC 1 cut(s) 862
StyD4I CCNGG 7 cut(s) 337, 388, 607, 754, 791, 885, 924
StyI CCWWGG 2 cut(s) 781, 841
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 819, 1049
TaqI TCGA 9 cut(s) 127, 246, 375, 898, 912, 954, 1049, 1118, 1129
TasI AATT 4 cut(s) 276, 378, 705, 1075
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 6 cut(s) 270, 424, 576, 589, 634, 909
Tru1I TTAA 7 cut(s) 96, 230, 366, 399, 557, 744, 936
Tru9I TTAA 7 cut(s) 96, 230, 366, 399, 557, 744, 936
TscAI CASTG 5 cut(s) 127, 145, 474, 631, 1006
TseFI GTSAC 3 cut(s) 309, 569, 832
TseI GCWGC 2 cut(s) 1080, 1164
Tsp45I GTSAC 3 cut(s) 309, 569, 832
TspDTI ATGAA 6 cut(s) 81, 520, 632, 809, 1127, 1190
TspGWI ACGGA 2 cut(s) 588, 870
TspRI CASTG 5 cut(s) 127, 145, 474, 631, 1006
VpaK11BI GGWCC 1 cut(s) 251
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 1 cut(s) 276
XceI RCATGY 2 cut(s) 74, 177
XmaJI CCTAGG 1 cut(s) 781
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 4 cut(s) 20, 350, 782, 1161
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.