Rh2AG039400

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014535
Physical Location & Seq
Forward (+)
3108139 .. 3110064
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG039400.1

Sequence Viewer

Length: 1008 bp
ATGGCTACTTTTAATGTCTTGGACTATGGAGCTGTCAGTGGTGGCCACATAGACAATGCACTGATATTAGGGAGACTTTTGGCACCAAAGTCACCTGAAGCATGGAAGGACCTTGATCCAGGTCAATGGCTAGCATTTCATGGTGTTAATGGACTCATGGTTGCTGGCCCTGGTACTATTAATGGAAGAGGAAAGCGCTGGTGGAATCAATCTTGCAGATATCATCCAAAACTGGAGGGATGCACTTCACGGGCTCCAACGGCTTTGAAGGTTCTATCATGCAAGAAAAGCTGTCTTAGAGATATTCACTTTATAAACAGCTCCCAAGCCCATGTCTTAATAGAAGGGTGTGATGGAATCAAGATTGAGAATCTTATGATTGAAGCTCCAGGAAATAGTCCCAACACTGATGGGATTCACATTCAGTCCTCTCAAAATGTCATTATCAACAACACCATCATAGGCTCTGGTGATGATTGTATATCAATTGGAGACCATATATCCAATATTGCCATCTCATATATTAAATGTGGCCCTGGTCATGGAATAAGCATTGGAAGCTTAGGGAAATCCGGGAATGTCGTTCATGTAGAGAACATTCATGTCAGTAAGGTTACCCTCCAAGGAACTACGAACGGAGCTCGGATCAAGACATGGCAGGTTGGCAGGGGTTCTGTTCGAGGGGTCAGATTCGAAGATTTCTTTCTGGAGTCTGTTAAGAACCCCATAATCATCGATCAAAACTACTGCGAAGTTAGGGGTGCCTGCGAGGAACTGCCGACTGGTGTTCACATAAGTGATGTCTCCTTCAAAAACTTCTATGGAACATCGAGTACCAATATCGCCATCAATCTGAATTGCAGTCGCTCCGTTCCTTGCACCGGAATATTGTTGAAGTCGGTATACCTTCGATCTGCTATTGTTGGACAGCATGTAACTTCTAGTTGCAGAAATGCCTACGGCATTGCCTTTGGATTACTTCGGCCAAGCCCCTGTGTCCAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

335

Amino Acids

36.03

Weight (kDa)

8.66

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 39 - 319 2.6e-82 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80140
fragaria_vesca FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310
prunus_persica Prupe.7G242600_v2.0.a1
pyrus_communis pycom15g15490
rosa_chinensis RchiOBHm_Chr2g0088471
rosa_laevigata RLG00000015957
rosa_roxburghii Rroxscaffold_2G00152660
rosa_rugosa Rorug01G0484300
rosa_samantha Rh2AG039400 Rh2BG038200 Rh2CG039500 Rh2DG038900
rosa_wichuraiana Rw2G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 2 cut(s) 82, 761
AccI GTMKAC 1 cut(s) 903
AclWI GGATC 2 cut(s) 110, 653
AcoI YGGCCR 2 cut(s) 43, 983
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 175, 835
AfeI AGCGCT 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 542, 881
AgsI TTSAA 4 cut(s) 268, 383, 811, 895
AjnI CCWGG 4 cut(s) 118, 169, 388, 535
AleI CACNNNNGTG 1 cut(s) 795
AluBI AGCT 6 cut(s) 32, 291, 321, 386, 561, 641
AluI AGCT 6 cut(s) 32, 291, 321, 386, 561, 641
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 3 cut(s) 67, 486, 808
AlwI GGATC 2 cut(s) 110, 653
Aor51HI AGCGCT 1 cut(s) 197
AoxI GGCC 4 cut(s) 43, 166, 532, 983
AseI ATTAAT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 3 cut(s) 109, 167, 533
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 2 cut(s) 84, 482
AsuII TTCGAA 1 cut(s) 693
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 109
BalI TGGCCA 1 cut(s) 45
BanI GGYRCC 2 cut(s) 82, 761
BanII GRGCYC 2 cut(s) 256, 643
BarI GAAGNNNNNNTAC 2 cut(s) 887, 919
Bbv12I GWGCWC 1 cut(s) 643
BccI CCATC 5 cut(s) 347, 404, 464, 521, 854
BceAI ACGGC 2 cut(s) 276, 976
BciT130I CCWGG 4 cut(s) 120, 171, 390, 537
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 3 cut(s) 67, 486, 808
BfaI CTAG 2 cut(s) 131, 942
BfoI RGCGCY 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 649
Bme1390I CCNGG 5 cut(s) 120, 171, 390, 537, 574
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 3 cut(s) 109, 167, 533
BmiI GGNNCC 3 cut(s) 84, 255, 763
BmrFI CCNGG 5 cut(s) 120, 171, 390, 537, 574
BmsI GCATC 1 cut(s) 230
BmtI GCTAGC 1 cut(s) 134
BpmI CTGGAG 3 cut(s) 254, 372, 728
Bpu10I CCTNAGC 1 cut(s) 562
Bpu14I TTCGAA 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 574
Bsa29I ATCGAT 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 3 cut(s) 169, 535, 622
BsaWI WCCGGW 1 cut(s) 881
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 881
Bse1I ACTGG 2 cut(s) 237, 787
Bse3DI GCAATG 1 cut(s) 963
BseBI CCWGG 4 cut(s) 120, 171, 390, 537
BseCI ATCGAT 1 cut(s) 735
BseDI CCNNGG 3 cut(s) 169, 535, 622
BseGI GGATG 2 cut(s) 223, 245
BseLI CCNNNNNNNGG 2 cut(s) 542, 881
BseMI GCAATG 1 cut(s) 963
BseNI ACTGG 2 cut(s) 237, 787
BshFI GGCC 4 cut(s) 45, 168, 534, 985
BshNI GGYRCC 2 cut(s) 82, 761
BshVI ATCGAT 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 643
BsiSI CCGG 2 cut(s) 573, 882
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 542, 881
BsmAI GTCTC 3 cut(s) 67, 486, 808
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 4 cut(s) 45, 168, 534, 985
Bso31I GGTCTC 1 cut(s) 486
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 256, 643
Bsp143I GATC 4 cut(s) 115, 645, 736, 911
BspANI GGCC 4 cut(s) 45, 168, 534, 985
BspDI ATCGAT 1 cut(s) 735
BspLI GGNNCC 3 cut(s) 84, 255, 763
BspMI ACCTGC 1 cut(s) 649
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 2 cut(s) 110, 653
BspT104I TTCGAA 1 cut(s) 693
BspT107I GGYRCC 2 cut(s) 82, 761
BspTNI GGTCTC 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 963
BsrI ACTGG 2 cut(s) 237, 787
BssECI CCNNGG 3 cut(s) 169, 535, 622
BssMI GATC 4 cut(s) 115, 645, 736, 911
BssNAI GTATAC 1 cut(s) 904
BssT1I CCWWGG 1 cut(s) 622
Bst1107I GTATAC 1 cut(s) 904
Bst2UI CCWGG 4 cut(s) 120, 171, 390, 537
Bst6I CTCTTC 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 3 cut(s) 132, 166, 766
BstDEI CTNAG 2 cut(s) 296, 562
BstEII GGTNACC 1 cut(s) 613
BstF5I GGATG 2 cut(s) 223, 245
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 4 cut(s) 118, 648, 739, 914
BstMAI GTCTC 3 cut(s) 67, 486, 808
BstMBI GATC 4 cut(s) 115, 645, 736, 911
BstMWI GCNNNNNNNGC 3 cut(s) 260, 288, 558
BstNI CCWGG 4 cut(s) 120, 171, 390, 537
BstNSI RCATGY 1 cut(s) 935
BstPI GGTNACC 1 cut(s) 613
BstSCI CCNGG 5 cut(s) 118, 169, 388, 535, 572
BstXI CCANNNNNNTGG 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 904
Bsu15I ATCGAT 1 cut(s) 735
BsuRI GGCC 4 cut(s) 45, 168, 534, 985
BsuTUI ATCGAT 1 cut(s) 735
BtsCI GGATG 2 cut(s) 223, 245
BtsIMutI CAGTG 3 cut(s) 43, 59, 405
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 3 cut(s) 132, 166, 766
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 3 cut(s) 109, 167, 533
ClaI ATCGAT 1 cut(s) 735
Csp6I GTAC 2 cut(s) 174, 834
CviQI GTAC 2 cut(s) 174, 834
DdeI CTNAG 2 cut(s) 296, 562
DpnI GATC 4 cut(s) 117, 647, 738, 913
DpnII GATC 4 cut(s) 115, 645, 736, 911
EaeI YGGCCR 2 cut(s) 43, 983
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 622
Eco24I GRGCYC 2 cut(s) 256, 643
Eco31I GGTCTC 1 cut(s) 486
Eco32I GATATC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 109
Eco47III AGCGCT 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 1 cut(s) 117
Eco91I GGTNACC 1 cut(s) 613
EcoICRI GAGCTC 1 cut(s) 641
EcoO109I RGGNCCY 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 613
EcoRII CCWGG 4 cut(s) 118, 169, 388, 535
EcoRV GATATC 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 256, 643
ErhI CCWWGG 1 cut(s) 622
FaqI GGGAC 1 cut(s) 384
FblI GTMKAC 1 cut(s) 903
FokI GGATG 2 cut(s) 210, 252
FriOI GRGCYC 2 cut(s) 256, 643
FspBI CTAG 2 cut(s) 131, 942
GlaI GCGC 1 cut(s) 197
GsuI CTGGAG 3 cut(s) 254, 372, 728
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 4 cut(s) 45, 168, 534, 985
HapII CCGG 2 cut(s) 573, 882
HhaI GCGC 1 cut(s) 198
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 7 cut(s) 153, 205, 357, 370, 415, 690, 710
HpaII CCGG 2 cut(s) 573, 882
HphI GGTGA 2 cut(s) 84, 482
Hpy166II GTNNAC 2 cut(s) 790, 904
Hpy188I TCNGA 4 cut(s) 645, 689, 855, 1007
Hpy188III TCNNGA 3 cut(s) 361, 649, 707
Hpy8I GTNNAC 2 cut(s) 790, 904
HpyAV CCTTC 5 cut(s) 100, 262, 338, 817, 917
HpyCH4V TGCA 7 cut(s) 59, 216, 243, 282, 861, 879, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 288, 558
HpyF3I CTNAG 2 cut(s) 296, 562
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 4 cut(s) 115, 645, 736, 911
LmnI GCTCC 6 cut(s) 29, 259, 326, 391, 638, 872
LweI GCATC 1 cut(s) 230
MaeI CTAG 2 cut(s) 131, 942
MaeIII GTNAC 3 cut(s) 90, 613, 934
MalI GATC 4 cut(s) 117, 647, 738, 913
MboI GATC 4 cut(s) 115, 645, 736, 911
MboII GAAGA 2 cut(s) 198, 707
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 256, 643
MlsI TGGCCA 1 cut(s) 45
MluCI AATT 3 cut(s) 486, 856, 1001
MluNI TGGCCA 1 cut(s) 45
MlyI GAGTC 2 cut(s) 147, 719
MmeI TCCRAC 2 cut(s) 281, 904
MnlI CCTC 6 cut(s) 182, 229, 439, 629, 674, 763
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
MseI TTAA 6 cut(s) 12, 147, 180, 338, 525, 717
MslI CAYNNNNRTG 1 cut(s) 795
Msp20I TGGCCA 1 cut(s) 45
MspI CCGG 2 cut(s) 573, 882
MspR9I CCNGG 5 cut(s) 120, 171, 390, 537, 574
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 4 cut(s) 120, 171, 390, 537
MwoI GCNNNNNNNGC 3 cut(s) 260, 288, 558
NciI CCSGG 1 cut(s) 574
NdeII GATC 4 cut(s) 115, 645, 736, 911
NheI GCTAGC 1 cut(s) 130
NlaIV GGNNCC 3 cut(s) 84, 255, 763
NmuCI GTSAC 1 cut(s) 90
NspI RCATGY 1 cut(s) 935
NspV TTCGAA 1 cut(s) 693
OliI CACNNNNGTG 1 cut(s) 795
PfeI GAWTC 5 cut(s) 205, 357, 370, 415, 690
PfoI TCCNGGA 2 cut(s) 388, 572
PleI GAGTC 2 cut(s) 147, 718
PpsI GAGTC 2 cut(s) 147, 718
PpuMI RGGWCCY 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 180
PsiI TTATAA 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 643
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 4 cut(s) 118, 169, 388, 535
PspEI GGTNACC 1 cut(s) 613
PspGI CCWGG 4 cut(s) 118, 169, 388, 535
PspN4I GGNNCC 3 cut(s) 84, 255, 763
PspPI GGNCC 3 cut(s) 109, 167, 533
PspPPI RGGWCCY 1 cut(s) 109
PsrI GAACNNNNNNTAC 2 cut(s) 817, 849
RsaI GTAC 2 cut(s) 175, 835
RsaNI GTAC 2 cut(s) 174, 834
RseI CAYNNNNRTG 1 cut(s) 795
SacI GAGCTC 1 cut(s) 643
SaqAI TTAA 6 cut(s) 12, 147, 180, 338, 525, 717
Sau3AI GATC 4 cut(s) 115, 645, 736, 911
Sau96I GGNCC 3 cut(s) 109, 167, 533
SchI GAGTC 2 cut(s) 147, 719
ScrFI CCNGG 5 cut(s) 120, 171, 390, 537, 574
SduI GDGCHC 2 cut(s) 256, 643
SfaNI GCATC 1 cut(s) 230
SfuI TTCGAA 1 cut(s) 693
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 795
Sse9I AATT 3 cut(s) 486, 856, 1001
SspI AATATT 2 cut(s) 508, 888
SspMI CTAG 2 cut(s) 131, 942
SstI GAGCTC 1 cut(s) 643
StyD4I CCNGG 5 cut(s) 118, 169, 388, 535, 572
StyI CCWWGG 1 cut(s) 622
TaqI TCGA 5 cut(s) 679, 693, 735, 830, 910
TasI AATT 3 cut(s) 486, 856, 1001
TfiI GAWTC 5 cut(s) 205, 357, 370, 415, 690
Tru1I TTAA 6 cut(s) 12, 147, 180, 338, 525, 717
Tru9I TTAA 6 cut(s) 12, 147, 180, 338, 525, 717
TscAI CASTG 3 cut(s) 43, 66, 412
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 3 cut(s) 128, 575, 590
TspGWI ACGGA 2 cut(s) 651, 859
TspRI CASTG 3 cut(s) 43, 66, 412
VpaK11BI GGWCC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 180
XceI RCATGY 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 903
XspI CTAG 2 cut(s) 131, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.