Rorug01G0484300

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014535
Physical Location & Seq
Forward (+)
57097843 .. 57099265
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0484300.1

Sequence Viewer

Length: 624 bp
ATGTTTCAAGGGAAATGCAAGAAAGCCCTTGTCATTGGTGCAGGATTAGTTTTGTTCCAACAGATCACAGGGCAACCAAGTGTGCTGTACTATGCTGCATCAATTTTTCAGAGTGCAGGGTTCTCTGCAGCAGCTGACGCAACACGGGTCTCAATTCTACTTGGTTTATTCAAGTTGGTAATGACTGCAGCAGCTGTGCTTGTTGTTGATAGATTTGGAAGGAGACCTCTTCTACTTGGAGGTGTTTTGGGGATGGTGATCTCTTTATTCATGTTGGGATCATATTACCTTTTCTTGGACGATGCACCAGCTGTGGCTGCAATTGCACTGCTGCTCTATGTTGGGTGTTATCAGTTATCGTTTGGTCCGATTGGTTGGCTAATGATATCAGAGATTTTCCCGTTAAGATTTAGAGGGCAAGGACTGAGTATAGGAGTGCTTGTGAATTTTGCTGCAAATGCGCTAGTCGCTTTTGCATTTTCCCCTCTAAAGGCGTTGCTGGGAGCTGGAATATTGTTTTATGTATTTGGAGCAATAGCTGTGGCATCTCTTGCTTTCATTTTCTTCATTGTCCCGGAGACAAAGGGTCTCACTCTTGAGGAAATTGAAGCCAAATGCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

207

Amino Acids

21.99

Weight (kDa)

9.05

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 6 - 204 2e-50 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80140
fragaria_vesca FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310
prunus_persica Prupe.7G242600_v2.0.a1
pyrus_communis pycom15g15490
rosa_chinensis RchiOBHm_Chr2g0088471
rosa_laevigata RLG00000015957
rosa_roxburghii Rroxscaffold_2G00152660
rosa_rugosa Rorug01G0484300
rosa_samantha Rh2AG039400 Rh2BG038200 Rh2CG039500 Rh2DG038900
rosa_wichuraiana Rw2G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 445
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 295, 490
AgsI TTSAA 3 cut(s) 8, 172, 608
AhdI GACNNNNNGTC 1 cut(s) 585
AluBI AGCT 5 cut(s) 134, 194, 311, 506, 539
AluI AGCT 5 cut(s) 134, 194, 311, 506, 539
Alw26I GTCTC 4 cut(s) 154, 217, 572, 593
AlwI GGATC 1 cut(s) 286
AlwNI CAGNNNCTG 2 cut(s) 134, 194
ApeKI GCWGC 8 cut(s) 95, 128, 131, 188, 191, 317, 331, 452
ApoI RAATTY 1 cut(s) 445
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 365
BbvI GCAGC 8 cut(s) 82, 140, 143, 200, 203, 304, 318, 439
BccI CCATC 1 cut(s) 247
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 4 cut(s) 154, 217, 572, 593
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 2 cut(s) 126, 186
BisI GCNGC 8 cut(s) 96, 129, 132, 189, 192, 318, 332, 453
BlsI GCNGC 8 cut(s) 97, 130, 133, 190, 193, 319, 333, 454
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 365
BmeRI GACNNNNNGTC 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 3 cut(s) 107, 292, 554
BpuEI CTTGAG 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 257
BsaI GGTCTC 3 cut(s) 154, 217, 593
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 490
Bse8I GATNNNNATC 1 cut(s) 257
BseGI GGATG 1 cut(s) 258
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 295, 490
BseMII CTCAG 1 cut(s) 416
BseXI GCAGC 8 cut(s) 82, 140, 143, 200, 203, 304, 318, 439
BseYI CCCAGC 1 cut(s) 499
BsgI GTGCAG 2 cut(s) 60, 135
BsiSI CCGG 1 cut(s) 575
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 295, 490
BsmAI GTCTC 4 cut(s) 154, 217, 572, 593
BsmFI GGGAC 1 cut(s) 557
Bso31I GGTCTC 3 cut(s) 154, 217, 593
Bsp143I GATC 3 cut(s) 63, 258, 278
BspCNI CTCAG 1 cut(s) 417
BspMAI CTGCAG 2 cut(s) 130, 190
BspPI GGATC 1 cut(s) 286
BspTNI GGTCTC 3 cut(s) 154, 217, 593
BssMI GATC 3 cut(s) 63, 258, 278
Bst6I CTCTTC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 551
BstDEI CTNAG 1 cut(s) 425
BstF5I GGATG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 3 cut(s) 66, 261, 281
BstMAI GTCTC 4 cut(s) 154, 217, 572, 593
BstMBI GATC 3 cut(s) 63, 258, 278
BstMWI GCNNNNNNNGC 6 cut(s) 137, 317, 323, 458, 467, 551
BstSCI CCNGG 1 cut(s) 573
BstSFI CTRYAG 2 cut(s) 126, 186
BstV1I GCAGC 8 cut(s) 82, 140, 143, 200, 203, 304, 318, 439
BtsCI GGATG 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 326
CaiI CAGNNNCTG 2 cut(s) 134, 194
CfoI GCGC 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 88
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 1 cut(s) 271
CviJI RGCY 9 cut(s) 26, 134, 194, 311, 317, 379, 506, 539, 611
CviKI_1 RGCY 9 cut(s) 26, 134, 194, 311, 317, 379, 506, 539, 611
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 425
DpnI GATC 3 cut(s) 65, 260, 280
DpnII GATC 3 cut(s) 63, 258, 278
DriI GACNNNNNGTC 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 234
Eam1105I GACNNNNNGTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 234
Eco31I GGTCTC 3 cut(s) 154, 217, 593
Eco32I GATATC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 365
EcoRV GATATC 1 cut(s) 387
FaeI CATG 1 cut(s) 274
FaiI YATR 6 cut(s) 93, 272, 283, 339, 431, 522
FaqI GGGAC 1 cut(s) 557
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 8 cut(s) 96, 129, 132, 189, 192, 318, 332, 453
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 8 cut(s) 96, 129, 132, 189, 192, 318, 332, 453
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 462
GluI GCNGC 8 cut(s) 96, 129, 132, 189, 192, 318, 332, 453
GsaI CCCAGC 1 cut(s) 503
HapII CCGG 1 cut(s) 575
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 463
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HpaII CCGG 1 cut(s) 575
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 111, 369, 391
Hpy188III TCNNGA 1 cut(s) 596
HpyAV CCTTC 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 317, 323, 458, 467, 551
HpyF3I CTNAG 1 cut(s) 425
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 461
Kzo9I GATC 3 cut(s) 63, 258, 278
LmnI GCTCC 2 cut(s) 503, 530
LpnPI CCDG 7 cut(s) 27, 54, 102, 321, 485, 492, 588
Lsp1109I GCAGC 8 cut(s) 82, 140, 143, 200, 203, 304, 318, 439
LweI GCATC 3 cut(s) 107, 292, 554
MaeI CTAG 1 cut(s) 464
MalI GATC 3 cut(s) 65, 260, 280
MboI GATC 3 cut(s) 63, 258, 278
MboII GAAGA 2 cut(s) 221, 556
MfeI CAATTG 1 cut(s) 321
MluCI AATT 5 cut(s) 102, 153, 321, 445, 603
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 5 cut(s) 233, 237, 407, 495, 592
MseI TTAA 1 cut(s) 404
MspA1I CMGCKG 3 cut(s) 134, 194, 311
MspI CCGG 1 cut(s) 575
MspR9I CCNGG 1 cut(s) 575
MunI CAATTG 1 cut(s) 321
MwoI GCNNNNNNNGC 6 cut(s) 137, 317, 323, 458, 467, 551
NciI CCSGG 1 cut(s) 575
NdeII GATC 3 cut(s) 63, 258, 278
NlaIII CATG 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PfoI TCCNGGA 1 cut(s) 573
PkrI GCNGC 8 cut(s) 97, 130, 133, 190, 193, 319, 333, 454
PspFI CCCAGC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 365
PstI CTGCAG 2 cut(s) 130, 190
PstNI CAGNNNCTG 2 cut(s) 134, 194
PvuII CAGCTG 3 cut(s) 134, 194, 311
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 8 cut(s) 96, 129, 132, 189, 192, 318, 332, 453
Sau3AI GATC 3 cut(s) 63, 258, 278
Sau96I GGNCC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 575
SetI ASST 8 cut(s) 136, 196, 229, 244, 291, 313, 508, 541
SfaNI GCATC 3 cut(s) 107, 292, 554
SfcI CTRYAG 2 cut(s) 126, 186
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 5 cut(s) 102, 153, 321, 445, 603
SspI AATATT 1 cut(s) 513
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 573
TasI AATT 5 cut(s) 102, 153, 321, 445, 603
TatI WGTACW 1 cut(s) 87
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 1 cut(s) 333
TseI GCWGC 8 cut(s) 95, 128, 131, 188, 191, 317, 331, 452
TspDTI ATGAA 3 cut(s) 259, 547, 556
TspRI CASTG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 445
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.