RchiOBHm_Chr2g0088471

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014535
Physical Location & Seq
Forward (+)
3004855 .. 3007076
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46379

Sequence Viewer

Length: 1113 bp
ATGCATTTGCAGGGGAGCTATCTTTTTCTAGTTTTTCTTGGGACAGTTTCTGTGTTTACTGCATGTTCAGAACATGAACATGCAAACGCTACAATGGCTACTTTTAATGTCTTGGACTATGGAGCTGTCAGTGGTGGCCACATAGACAATGCACTGGCATTCTTGGATGCATGGAATGCAACATGTAGCTCAGAAGCTGAAAACTCGACTTTAATCATTCCCAGAAGGAGATTTCTTGTAAATCCAACCACTTTCAATGGTCCATGCAAAGCCCAAAGCATCAATTTTGTGATATTAGGGAGACTTTTGGCACCAAAGTCACCTGAAGCATGGAAGGACCTTGATCCAGGTCAATGGCTAGCATTTCATGGTGTTAATGGACTCAAGGTTGCTGGCCCTGGTACTATTAATGGAAGAGGAAAGCGCTGGTGGAATCAATCTTGCAGATATCATCCAAAACTGGCTTTGAAGGTTCTATCATGCAAGAAAAGCTGTCTTAGAGATATTCACTTTATAAACAGCTCCCAAGCCCATGTCTTAATAGAGGGGTGTGATGGAATCAAGATTGAGAATCTTATAATTGAAGCTCCAGGAAATAGTCCCAACACTGATGGGATTCACATTCAGTCCTCTCAAAATGTCATTATCAACAACACCATCATAGGCTCTGAATATGACTACTCGTTACTAGGTGATGATTGTATATCAATCGGAGACCATATATCCAATATTGCCATCTCATATATTAAATGTGGCCCTGGTCATGGAATAAGCATTGGAAGCTTAGGGAAATCCGGGAATGTCGTTCATGTAGAGAACATTCATGTCAGTAAGGTTACCCTCCAAGGAACTACGAACGGAGCTCGGATCAAGACATGGCAGCCGACTGGTGTTCACATAAGTGATGTCTCCTTCAAAAACTTCTATGGAACATCGAGTACCAATATCGCCATCAATCTGAATTGCAGTCGCTCCGTTCCTTGCACCGGAATATTGTTGAAGTCAGTATACCTTCGATCTGCTATAGTTGGACAGAATGTAACTTCTAGTTGCAGAAATGCCTACGGCATTGCCTTTGGATTAGTTCGGCCAAGCCCCTGTATCCAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

370

Amino Acids

39.91

Weight (kDa)

8.65

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 65 - 294 2e-55 Glycosyl hydrolases family 28
Glyco_hydro_28 PF00295 295 - 354 1.6e-06 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80140
fragaria_vesca FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310 FvH4_1g03310
prunus_persica Prupe.7G242600_v2.0.a1
pyrus_communis pycom15g15490
rosa_chinensis RchiOBHm_Chr2g0088471
rosa_laevigata RLG00000015957
rosa_roxburghii Rroxscaffold_2G00152660
rosa_rugosa Rorug01G0484300
rosa_samantha Rh2AG039400 Rh2BG038200 Rh2CG039500 Rh2DG038900
rosa_wichuraiana Rw2G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 515, 578
AccB1I GGYRCC 1 cut(s) 310
AccI GTMKAC 1 cut(s) 1008
AclWI GGATC 2 cut(s) 338, 875
AcoI YGGCCR 2 cut(s) 136, 1088
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 2 cut(s) 403, 940
AfeI AGCGCT 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 764, 986
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 5 cut(s) 256, 469, 584, 916, 1000
AjnI CCWGG 4 cut(s) 346, 397, 589, 757
AleI CACNNNNGTG 1 cut(s) 900
AluBI AGCT 9 cut(s) 18, 125, 189, 197, 492, 522, 587, 783, 863
AluI AGCT 9 cut(s) 18, 125, 189, 197, 492, 522, 587, 783, 863
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 3 cut(s) 295, 708, 913
AlwI GGATC 2 cut(s) 338, 875
AlwNI CAGNNNCTG 2 cut(s) 50, 197
Aor51HI AGCGCT 1 cut(s) 425
AoxI GGCC 4 cut(s) 136, 394, 754, 1088
ApeKI GCWGC 1 cut(s) 880
AseI ATTAAT 1 cut(s) 408
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 4 cut(s) 260, 337, 395, 755
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 2 cut(s) 312, 704
AsuNHI GCTAGC 1 cut(s) 358
AvaII GGWCC 2 cut(s) 260, 337
BalI TGGCCA 1 cut(s) 138
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 865
BarI GAAGNNNNNNTAC 2 cut(s) 992, 1024
Bbv12I GWGCWC 1 cut(s) 865
BbvI GCAGC 1 cut(s) 892
BccI CCATC 5 cut(s) 548, 605, 665, 743, 959
BceAI ACGGC 1 cut(s) 1081
BciT130I CCWGG 4 cut(s) 348, 399, 591, 759
BciVI GTATCC 1 cut(s) 1112
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 3 cut(s) 295, 708, 913
BfaI CTAG 4 cut(s) 29, 359, 689, 1047
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 427
BfuI GTATCC 1 cut(s) 1112
BisI GCNGC 1 cut(s) 881
BlsI GCNGC 1 cut(s) 882
Bme1390I CCNGG 5 cut(s) 348, 399, 591, 759, 796
Bme18I GGWCC 2 cut(s) 260, 337
BmgT120I GGNCC 4 cut(s) 260, 337, 395, 755
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 5 cut(s) 348, 399, 591, 759, 796
BmsI GCATC 2 cut(s) 157, 288
BmtI GCTAGC 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 784
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 796
BsaI GGTCTC 1 cut(s) 708
BsaJI CCNNGG 3 cut(s) 397, 757, 844
BsaWI WCCGGW 1 cut(s) 986
Bsc4I CCNNNNNNNGG 2 cut(s) 764, 986
Bse1I ACTGG 3 cut(s) 159, 465, 892
Bse3DI GCAATG 1 cut(s) 1068
BseBI CCWGG 4 cut(s) 348, 399, 591, 759
BseDI CCNNGG 3 cut(s) 397, 757, 844
BseGI GGATG 2 cut(s) 172, 451
BseLI CCNNNNNNNGG 2 cut(s) 764, 986
BseMI GCAATG 1 cut(s) 1068
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 159, 465, 892
BseXI GCAGC 1 cut(s) 892
BshFI GGCC 4 cut(s) 138, 396, 756, 1090
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 865
BsiSI CCGG 2 cut(s) 795, 987
BslFI GGGAC 2 cut(s) 55, 585
BslI CCNNNNNNNGG 2 cut(s) 764, 986
BsmAI GTCTC 3 cut(s) 295, 708, 913
BsmFI GGGAC 2 cut(s) 55, 585
BsmI GAATGC 2 cut(s) 158, 181
BsnI GGCC 4 cut(s) 138, 396, 756, 1090
Bso31I GGTCTC 1 cut(s) 708
Bsp1286I GDGCHC 1 cut(s) 865
Bsp143I GATC 3 cut(s) 343, 867, 1016
BspANI GGCC 4 cut(s) 138, 396, 756, 1090
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 312
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 2 cut(s) 338, 875
BspT107I GGYRCC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 1068
BsrI ACTGG 3 cut(s) 159, 465, 892
BssECI CCNNGG 3 cut(s) 397, 757, 844
BssMI GATC 3 cut(s) 343, 867, 1016
BssNAI GTATAC 1 cut(s) 1009
BssT1I CCWWGG 1 cut(s) 844
Bst1107I GTATAC 1 cut(s) 1009
Bst2UI CCWGG 4 cut(s) 348, 399, 591, 759
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 409
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 360, 394
BstDEI CTNAG 3 cut(s) 190, 497, 784
BstEII GGTNACC 1 cut(s) 835
BstF5I GGATG 2 cut(s) 172, 451
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 3 cut(s) 346, 870, 1019
BstMAI GTCTC 3 cut(s) 295, 708, 913
BstMBI GATC 3 cut(s) 343, 867, 1016
BstMWI GCNNNNNNNGC 4 cut(s) 95, 176, 489, 780
BstNI CCWGG 4 cut(s) 348, 399, 591, 759
BstNSI RCATGY 3 cut(s) 66, 83, 186
BstPI GGTNACC 1 cut(s) 835
BstSCI CCNGG 5 cut(s) 346, 397, 589, 757, 794
BstSFI CTRYAG 1 cut(s) 1023
BstV1I GCAGC 1 cut(s) 892
BstXI CCANNNNNNTGG 1 cut(s) 354
BstZ17I GTATAC 1 cut(s) 1009
BsuI GTATCC 1 cut(s) 1112
BsuRI GGCC 4 cut(s) 138, 396, 756, 1090
BtsCI GGATG 2 cut(s) 172, 451
BtsIMutI CAGTG 3 cut(s) 136, 152, 606
Cac8I GCNNGC 2 cut(s) 360, 394
CaiI CAGNNNCTG 2 cut(s) 50, 197
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 4 cut(s) 260, 337, 395, 755
Csp6I GTAC 2 cut(s) 402, 939
CviQI GTAC 2 cut(s) 402, 939
DdeI CTNAG 3 cut(s) 190, 497, 784
DpnI GATC 3 cut(s) 345, 869, 1018
DpnII GATC 3 cut(s) 343, 867, 1016
EaeI YGGCCR 2 cut(s) 136, 1088
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Ecl136II GAGCTC 1 cut(s) 863
Eco130I CCWWGG 1 cut(s) 844
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 708
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 260, 337
Eco47III AGCGCT 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 863
Eco57I CTGAAG 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 835
EcoICRI GAGCTC 1 cut(s) 863
EcoO109I RGGNCCY 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 835
EcoRII CCWGG 4 cut(s) 346, 397, 589, 757
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 844
EcoT22I ATGCAT 2 cut(s) 6, 172
EcoT38I GRGCYC 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 844
FaqI GGGAC 2 cut(s) 55, 585
FblI GTMKAC 1 cut(s) 1008
Fnu4HI GCNGC 1 cut(s) 881
FokI GGATG 2 cut(s) 179, 438
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 1 cut(s) 881
FspBI CTAG 4 cut(s) 29, 359, 689, 1047
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 881
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 4 cut(s) 138, 396, 756, 1090
HapII CCGG 2 cut(s) 795, 987
HhaI GCGC 1 cut(s) 426
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 781
HinfI GANTC 5 cut(s) 381, 433, 558, 571, 616
HpaII CCGG 2 cut(s) 795, 987
HphI GGTGA 2 cut(s) 312, 704
Hpy166II GTNNAC 3 cut(s) 57, 895, 1009
Hpy188I TCNGA 7 cut(s) 70, 193, 670, 713, 867, 960, 1112
Hpy188III TCNNGA 2 cut(s) 562, 871
Hpy8I GTNNAC 3 cut(s) 57, 895, 1009
HpyAV CCTTC 5 cut(s) 219, 328, 463, 922, 1022
HpyCH4III ACNGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 176, 489, 780
HpyF3I CTNAG 3 cut(s) 190, 497, 784
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 3 cut(s) 343, 867, 1016
LmnI GCTCC 6 cut(s) 15, 122, 527, 592, 860, 977
Lsp1109I GCAGC 1 cut(s) 892
LweI GCATC 2 cut(s) 157, 288
MaeI CTAG 4 cut(s) 29, 359, 689, 1047
MaeIII GTNAC 4 cut(s) 318, 684, 835, 1039
MalI GATC 3 cut(s) 345, 869, 1018
MboI GATC 3 cut(s) 343, 867, 1016
MboII GAAGA 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 865
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 4 cut(s) 283, 579, 961, 1106
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 375
MmeI TCCRAC 2 cut(s) 269, 1009
MnlI CCTC 4 cut(s) 410, 538, 640, 851
Mox20I TGGCCA 1 cut(s) 138
Mph1103I ATGCAT 2 cut(s) 6, 172
MscI TGGCCA 1 cut(s) 138
MseI TTAA 6 cut(s) 105, 212, 375, 408, 539, 747
MslI CAYNNNNRTG 2 cut(s) 78, 900
Msp20I TGGCCA 1 cut(s) 138
MspI CCGG 2 cut(s) 795, 987
MspR9I CCNGG 5 cut(s) 348, 399, 591, 759, 796
Mva1269I GAATGC 2 cut(s) 158, 181
MvaI CCWGG 4 cut(s) 348, 399, 591, 759
MwoI GCNNNNNNNGC 4 cut(s) 95, 176, 489, 780
NciI CCSGG 1 cut(s) 796
NdeII GATC 3 cut(s) 343, 867, 1016
NheI GCTAGC 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 318
NsiI ATGCAT 2 cut(s) 6, 172
NspI RCATGY 3 cut(s) 66, 83, 186
OliI CACNNNNGTG 1 cut(s) 900
PciI ACATGT 1 cut(s) 182
PctI GAATGC 2 cut(s) 158, 181
PfeI GAWTC 4 cut(s) 433, 558, 571, 616
PfoI TCCNGGA 2 cut(s) 589, 794
PkrI GCNGC 1 cut(s) 882
PleI GAGTC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 375
PpuMI RGGWCCY 1 cut(s) 337
PscI ACATGT 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 408
PsiI TTATAA 2 cut(s) 515, 578
Psp124BI GAGCTC 1 cut(s) 865
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 4 cut(s) 346, 397, 589, 757
PspEI GGTNACC 1 cut(s) 835
PspGI CCWGG 4 cut(s) 346, 397, 589, 757
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 4 cut(s) 260, 337, 395, 755
PspPPI RGGWCCY 1 cut(s) 337
PsrI GAACNNNNNNTAC 2 cut(s) 922, 954
PstNI CAGNNNCTG 2 cut(s) 50, 197
RsaI GTAC 2 cut(s) 403, 940
RsaNI GTAC 2 cut(s) 402, 939
RseI CAYNNNNRTG 2 cut(s) 78, 900
SacI GAGCTC 1 cut(s) 865
SaqAI TTAA 6 cut(s) 105, 212, 375, 408, 539, 747
SatI GCNGC 1 cut(s) 881
Sau3AI GATC 3 cut(s) 343, 867, 1016
Sau96I GGNCC 4 cut(s) 260, 337, 395, 755
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 5 cut(s) 348, 399, 591, 759, 796
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 2 cut(s) 157, 288
SfcI CTRYAG 1 cut(s) 1023
SinI GGWCC 2 cut(s) 260, 337
SmiMI CAYNNNNRTG 2 cut(s) 78, 900
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 4 cut(s) 283, 579, 961, 1106
SspI AATATT 2 cut(s) 730, 993
SspMI CTAG 4 cut(s) 29, 359, 689, 1047
SstI GAGCTC 1 cut(s) 865
StyD4I CCNGG 5 cut(s) 346, 397, 589, 757, 794
StyI CCWWGG 1 cut(s) 844
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 3 cut(s) 206, 935, 1015
TasI AATT 4 cut(s) 283, 579, 961, 1106
TfiI GAWTC 4 cut(s) 433, 558, 571, 616
Tru1I TTAA 6 cut(s) 105, 212, 375, 408, 539, 747
Tru9I TTAA 6 cut(s) 105, 212, 375, 408, 539, 747
TscAI CASTG 3 cut(s) 136, 159, 613
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 1 cut(s) 880
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 4 cut(s) 90, 356, 797, 812
TspGWI ACGGA 2 cut(s) 873, 964
TspRI CASTG 3 cut(s) 136, 159, 613
VpaK11BI GGWCC 2 cut(s) 260, 337
VspI ATTAAT 1 cut(s) 408
XceI RCATGY 3 cut(s) 66, 83, 186
XmiI GTMKAC 1 cut(s) 1008
XspI CTAG 4 cut(s) 29, 359, 689, 1047
Zsp2I ATGCAT 2 cut(s) 6, 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.