AT1G80270

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
30180907 .. 30183561
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80270.5

Sequence Viewer

Length: 1791 bp
ATGTTCGCTCTTTCCAAGGTTTTACGAAGAACGCAGAGACTCCGACTGGGAGCTTGTTCTGCTGTGTTTTCAAAAGATATACAATTAGGAGGAGAAAGGAGCTTTGATTCCAATTCGATTGCTTCTACTAAACGTGAAGCTGTGCCAAGATTTTACGAGATCTCCTCTTTGAGTAATCGTGCTCTTTCCTCCAGTGCTGGCACTAAAAGTGATCAAGAGGAAGACGACCTCGAAGACGGTTTCTCAGAACTGGAAGGTTCAAAGTCTGGCCAAGGTTCAACTAGTAGTGATGAAGATGAGGGAAAGCTCTCCGCTGATGAAGAAGAAGAAGAAGAACTAGACCTCATTGAAACCGACGTTAGTAGAAAAACAGTTGAAAAGAAACAATCTGAGCTATTTAAGACCATTGTCTCCGCACCCGGTCTGTCTATAGGTAGTGCTCTTGATAAATGGGTGGAAGAAGGAAATGAGATCACTCGAGTTGAGATTGCTAAGGCAATGCTCCAGCTGCGCAGGCGTCGCATGTATGGAAGAGCGTTACAGATGTCAGAATGGTTGGAAGCAAATAAGAAAATTGAAATGACTGAGAGAGATTATGCTTCTCGGTTAGATCTGACAGTTAAGATTCGTGGTTTAGAAAAGGGAGAAGCTTGTATGCAGAAGATCCCAAAATCTTTTAAAGGGGAAGTGCTTTACCGTACCCTCTTGGCGAATTGTGTTGCTGCTGGCAATGTGAAGAAATCCGAACTGGTGTTTAACAAAATGAAGGACTTGGGATTCCCTCTCTCTGGATTTACTTGTGATCAGATGCTTCTGCTCCACAAGAGGATCGACAGGAAGAAAATTGCTGATGTACTATTGCTCATGGAGAAAGAAAATATCAAGCCAAGTCTTCTCACTTACAAAATCCTGATTGATGTCAAAGGTGCAACAAATGACATAAGTGGTATGGAGCAAATTCTGGAGACAATGAAAGATGAAGGTGTTGAACTGGACTTCCAGACGCAAGCTCTCACTGCTAGACACTATTCGGGAGCTGGCCTTAAAGATAAAGCCGAGAAAGTCTTGAAAGAGATGGAAGGTGAAAGCTTAGAGGCAAATCGCCGGGCATTCAAAGATTTGCTCTCCATCTATGCCTCTCTTGGGAGAGAAGATGAAGTGAAAAGAATATGGAAGATCTGTGAATCAAAGCCCTACTTTGAGGAATCCCTTGCTGCAATCCAAGCTTTTGGAAAGCTCAATAAAGTGCAAGAAGCAGAGGCGATTTTTGAGAAGATTGTGAAGATGGACAGAAGAGCTTCTTCTAGTACTTACTCCGTTCTCTTGAGGGTTTACGTAGATCACAAGATGCTCTCAAAGGGTAAGGATCTGGTTAAACGAATGGCTGAGAGCGGTTGCAGGATCGAGGCAACGACATGGGATGCACTCATCAAGCTCTATGTGGAAGCTGGAGAAGTTGAAAAGGCTGATTCTTTGCTGGACAAGGCATCAAAACAGAGCCATACAAAACTGATGATGAACTCCTTCATGTATATCATGGACGAGTACTCAAAACGGGGAGATGTTCATAACACAGAGAAGATATTCCTAAAAATGAGGGAAGCTGGGTATACATCTCGGCTTAGGCAGTTCCAAGCCCTCATGCAGGCTTACATAAACGCCAAATCTCCTGCATATGGAATGCGAGATAGATTGAAGGCGGATAATATCTTTCCAAACAAATCCATGGCTGCACAGTTGGCTCAAGGTGATCCATTTAAGAAGACAGCTATCTCTGATATTCTGGATTGA

Protein Analysis

596

Amino Acids

67.28

Weight (kDa)

7.52

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 251 - 309 2.7e-06 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 512
AccBSI CCGCTC 1 cut(s) 1392
AccI GTMKAC 1 cut(s) 1610
AciI CCGC 4 cut(s) 312, 414, 1392, 1700
AclWI GGATC 5 cut(s) 658, 836, 1374, 1409, 1745
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 957
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 4 cut(s) 700, 855, 1309, 1547
AfiI CCNNNNNNNGG 4 cut(s) 788, 1143, 1645, 1676
AhlI ACTAGT 1 cut(s) 281
AloI GAACNNNNNNTCC 2 cut(s) 981, 1013
Alw21I GWGCWC 2 cut(s) 184, 442
Alw26I GTCTC 3 cut(s) 31, 415, 959
AlwI GGATC 5 cut(s) 658, 836, 1374, 1409, 1745
Ama87I CYCGRG 1 cut(s) 477
AoxI GGCC 2 cut(s) 268, 1039
ApeKI GCWGC 4 cut(s) 508, 722, 1214, 1730
ApoI RAATTY 1 cut(s) 957
Asp700I GAANNNNTTC 3 cut(s) 1297, 1523, 1583
AspLEI GCGC 1 cut(s) 513
AsuC2I CCSGG 2 cut(s) 420, 1106
AsuHPI GGTGA 2 cut(s) 1094, 1760
AvaI CYCGRG 1 cut(s) 477
BalI TGGCCA 1 cut(s) 270
BbsI GAAGAC 4 cut(s) 228, 240, 884, 1769
Bbv12I GWGCWC 2 cut(s) 184, 442
BbvI GCAGC 4 cut(s) 495, 709, 1201, 1717
BccI CCATC 3 cut(s) 1069, 1136, 1279
BclI TGATCA 2 cut(s) 211, 802
BcnI CCSGG 2 cut(s) 420, 1106
BcoDI GTCTC 3 cut(s) 31, 415, 959
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 4 cut(s) 282, 338, 1020, 1305
BfmI CTRYAG 1 cut(s) 429
BglII AGATCT 3 cut(s) 159, 610, 1176
BisI GCNGC 4 cut(s) 509, 723, 1215, 1731
BlsI GCNGC 4 cut(s) 510, 724, 1216, 1732
BmcAI AGTACT 2 cut(s) 1309, 1547
Bme1390I CCNGG 2 cut(s) 420, 1106
BmeT110I CYCGRG 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 420, 1106
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 4 cut(s) 798, 1338, 1411, 1496
BmuI ACTGGG 1 cut(s) 56
BoxI GACNNNNGTC 1 cut(s) 407
BpiI GAAGAC 4 cut(s) 228, 240, 884, 1769
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpmI CTGGAG 4 cut(s) 175, 488, 983, 1470
Bpu10I CCTNAGC 2 cut(s) 492, 1622
BpuEI CTTGAG 2 cut(s) 1345, 1728
BpuMI CCSGG 2 cut(s) 420, 1106
BsaAI YACGTR 1 cut(s) 1336
BsaHI GRCGYC 1 cut(s) 517
BsaJI CCNNGG 3 cut(s) 15, 271, 1725
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 4 cut(s) 788, 1143, 1645, 1676
Bse1I ACTGG 5 cut(s) 51, 192, 255, 753, 996
Bse3DI GCAATG 2 cut(s) 504, 736
BseDI CCNNGG 3 cut(s) 15, 271, 1725
BseGI GGATG 1 cut(s) 1426
BseLI CCNNNNNNNGG 4 cut(s) 788, 1143, 1645, 1676
BseMI GCAATG 2 cut(s) 504, 736
BseMII CTCAG 4 cut(s) 258, 381, 576, 1377
BseNI ACTGG 5 cut(s) 51, 192, 255, 753, 996
BseRI GAGGAG 2 cut(s) 105, 154
BseXI GCAGC 4 cut(s) 495, 709, 1201, 1717
BseYI CCCAGC 1 cut(s) 1604
BsgI GTGCAG 1 cut(s) 1716
BshFI GGCC 2 cut(s) 270, 1041
BsiHKAI GWGCWC 2 cut(s) 184, 442
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 2 cut(s) 420, 1105
BslI CCNNNNNNNGG 4 cut(s) 788, 1143, 1645, 1676
BsmAI GTCTC 3 cut(s) 31, 415, 959
BsmI GAATGC 2 cut(s) 1109, 1686
BsnI GGCC 2 cut(s) 270, 1041
BsoBI CYCGRG 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 184, 442
Bsp19I CCATGG 1 cut(s) 1725
BspACI CCGC 4 cut(s) 312, 414, 1392, 1700
BspANI GGCC 2 cut(s) 270, 1041
BspCNI CTCAG 4 cut(s) 257, 382, 577, 1378
BspPI GGATC 5 cut(s) 658, 836, 1374, 1409, 1745
BspQI GCTCTTC 2 cut(s) 526, 1288
BsrBI CCGCTC 1 cut(s) 1392
BsrDI GCAATG 2 cut(s) 504, 736
BsrI ACTGG 5 cut(s) 51, 192, 255, 753, 996
BssECI CCNNGG 3 cut(s) 15, 271, 1725
BssNAI GTATAC 1 cut(s) 1611
BssNI GRCGYC 1 cut(s) 517
BssT1I CCWWGG 3 cut(s) 15, 271, 1725
Bst1107I GTATAC 1 cut(s) 1611
Bst4CI ACNGT 5 cut(s) 239, 373, 619, 698, 1737
Bst6I CTCTTC 2 cut(s) 526, 1288
BstACI GRCGYC 1 cut(s) 517
BstBAI YACGTR 1 cut(s) 1336
BstC8I GCNNGC 6 cut(s) 199, 515, 727, 1008, 1039, 1647
BstDEI CTNAG 7 cut(s) 244, 390, 492, 585, 1090, 1386, 1622
BstDSI CCRYGG 1 cut(s) 1725
BstENI CCTNNNNNAGG 1 cut(s) 1643
BstF5I GGATG 1 cut(s) 1426
BstHHI GCGC 1 cut(s) 513
BstMAI GTCTC 3 cut(s) 31, 415, 959
BstMWI GCNNNNNNNGC 7 cut(s) 59, 508, 514, 519, 1016, 1223, 1739
BstNSI RCATGY 1 cut(s) 526
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 418, 1104
BstSFI CTRYAG 1 cut(s) 429
BstSNI TACGTA 1 cut(s) 1336
BstV1I GCAGC 4 cut(s) 495, 709, 1201, 1717
BstV2I GAAGAC 4 cut(s) 228, 240, 884, 1769
BstX2I RGATCY 5 cut(s) 159, 610, 663, 1176, 1366
BstXI CCANNNNNNTGG 1 cut(s) 1229
BstYI RGATCY 5 cut(s) 159, 610, 663, 1176, 1366
BstZ17I GTATAC 1 cut(s) 1611
BsuRI GGCC 2 cut(s) 270, 1041
BtgI CCRYGG 1 cut(s) 1725
BtsCI GGATG 1 cut(s) 1426
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 2 cut(s) 199, 1014
Cac8I GCNNGC 6 cut(s) 199, 515, 727, 1008, 1039, 1647
CfoI GCGC 1 cut(s) 513
CseI GACGC 2 cut(s) 506, 1012
Csp6I GTAC 4 cut(s) 699, 854, 1308, 1546
CviAII CATG 7 cut(s) 523, 865, 1416, 1528, 1537, 1642, 1726
CviQI GTAC 4 cut(s) 699, 854, 1308, 1546
DdeI CTNAG 7 cut(s) 244, 390, 492, 585, 1090, 1386, 1622
DraI TTTAAA 1 cut(s) 679
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 526, 1288
EarI CTCTTC 2 cut(s) 526, 1288
EciI GGCGGA 1 cut(s) 1715
Eco105I TACGTA 1 cut(s) 1336
Eco130I CCWWGG 3 cut(s) 15, 271, 1725
Eco88I CYCGRG 1 cut(s) 477
EcoNI CCTNNNNNAGG 1 cut(s) 1643
EcoT14I CCWWGG 3 cut(s) 15, 271, 1725
ErhI CCWWGG 3 cut(s) 15, 271, 1725
FaeI CATG 7 cut(s) 526, 868, 1419, 1531, 1540, 1645, 1729
FalI AAGNNNNNCTT 4 cut(s) 1181, 1213, 1285, 1317
FatI CATG 7 cut(s) 522, 864, 1415, 1527, 1536, 1641, 1725
FauNDI CATATG 1 cut(s) 1675
FbaI TGATCA 2 cut(s) 211, 802
FblI GTMKAC 1 cut(s) 1610
Fnu4HI GCNGC 4 cut(s) 509, 723, 1215, 1731
FokI GGATG 1 cut(s) 1433
Fsp4HI GCNGC 4 cut(s) 509, 723, 1215, 1731
FspBI CTAG 4 cut(s) 282, 338, 1020, 1305
FspI TGCGCA 1 cut(s) 512
GlaI GCGC 1 cut(s) 512
GluI GCNGC 4 cut(s) 509, 723, 1215, 1731
GsaI CCCAGC 1 cut(s) 1608
GsuI CTGGAG 4 cut(s) 175, 488, 983, 1470
HaeIII GGCC 2 cut(s) 270, 1041
HapII CCGG 2 cut(s) 420, 1105
HgaI GACGC 2 cut(s) 506, 1012
HhaI GCGC 1 cut(s) 513
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 7 cut(s) 526, 868, 1419, 1531, 1540, 1645, 1729
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HindIII AAGCTT 3 cut(s) 648, 1087, 1224
HinfI GANTC 7 cut(s) 39, 107, 625, 777, 1184, 1205, 1469
HpaII CCGG 2 cut(s) 420, 1105
HphI GGTGA 2 cut(s) 1094, 1760
Hpy166II GTNNAC 2 cut(s) 1333, 1611
Hpy188I TCNGA 8 cut(s) 44, 247, 391, 550, 615, 745, 807, 1777
Hpy8I GTNNAC 2 cut(s) 1333, 1611
Hpy99I CGWCG 2 cut(s) 359, 522
HpyAV CCTTC 7 cut(s) 248, 455, 760, 974, 1073, 1534, 1690
HpyCH4III ACNGT 5 cut(s) 239, 373, 619, 698, 1737
HpyCH4IV ACGT 3 cut(s) 133, 357, 1335
HpyCH4V TGCA 9 cut(s) 658, 929, 1217, 1249, 1398, 1424, 1645, 1673, 1733
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 508, 514, 519, 1016, 1223, 1739
HpyF3I CTNAG 7 cut(s) 244, 390, 492, 585, 1090, 1386, 1622
HpySE526I ACGT 3 cut(s) 133, 357, 1335
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 7 cut(s) 526, 868, 1419, 1531, 1540, 1645, 1729
HspAI GCGC 1 cut(s) 511
Ksp22I TGATCA 2 cut(s) 211, 802
LguI GCTCTTC 2 cut(s) 526, 1288
LmnI GCTCC 6 cut(s) 50, 99, 507, 822, 952, 1034
Lsp1109I GCAGC 4 cut(s) 495, 709, 1201, 1717
LweI GCATC 4 cut(s) 798, 1338, 1411, 1496
MaeI CTAG 4 cut(s) 282, 338, 1020, 1305
MaeII ACGT 3 cut(s) 133, 357, 1335
MaeIII GTNAC 1 cut(s) 537
MbiI CCGCTC 1 cut(s) 1392
MflI RGATCY 5 cut(s) 159, 610, 663, 1176, 1366
MhlI GDGCHC 2 cut(s) 184, 442
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 6 cut(s) 83, 112, 573, 712, 843, 957
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 67, 537
Mox20I TGGCCA 1 cut(s) 270
MroXI GAANNNNTTC 3 cut(s) 1297, 1523, 1583
MscI TGGCCA 1 cut(s) 270
MseI TTAA 7 cut(s) 399, 621, 678, 756, 1044, 1374, 1758
Msp20I TGGCCA 1 cut(s) 270
MspA1I CMGCKG 2 cut(s) 314, 508
MspI CCGG 2 cut(s) 420, 1105
MspR9I CCNGG 2 cut(s) 420, 1106
Mva1269I GAATGC 2 cut(s) 1109, 1686
MwoI GCNNNNNNNGC 7 cut(s) 59, 508, 514, 519, 1016, 1223, 1739
NciI CCSGG 2 cut(s) 420, 1106
NcoI CCATGG 1 cut(s) 1725
NdeI CATATG 1 cut(s) 1675
NlaIII CATG 7 cut(s) 526, 868, 1419, 1531, 1540, 1645, 1729
NmeAIII GCCGAG 2 cut(s) 1081, 1597
NsbI TGCGCA 1 cut(s) 512
NspI RCATGY 1 cut(s) 526
PaeR7I CTCGAG 1 cut(s) 477
PciSI GCTCTTC 2 cut(s) 526, 1288
PctI GAATGC 2 cut(s) 1109, 1686
PdmI GAANNNNTTC 3 cut(s) 1297, 1523, 1583
PfeI GAWTC 6 cut(s) 107, 625, 777, 1184, 1205, 1469
PkrI GCNGC 4 cut(s) 510, 724, 1216, 1732
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 1336
PshAI GACNNNNGTC 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 1604
PspXI VCTCGAGB 1 cut(s) 477
PsuI RGATCY 5 cut(s) 159, 610, 663, 1176, 1366
PvuII CAGCTG 1 cut(s) 508
RsaI GTAC 4 cut(s) 700, 855, 1309, 1547
RsaNI GTAC 4 cut(s) 699, 854, 1308, 1546
SapI GCTCTTC 2 cut(s) 526, 1288
SaqAI TTAA 7 cut(s) 399, 621, 678, 756, 1044, 1374, 1758
SatI GCNGC 4 cut(s) 509, 723, 1215, 1731
ScaI AGTACT 2 cut(s) 1309, 1547
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 420, 1106
SduI GDGCHC 2 cut(s) 184, 442
SfaNI GCATC 4 cut(s) 798, 1338, 1411, 1496
SfcI CTRYAG 1 cut(s) 429
Sfr274I CTCGAG 1 cut(s) 477
SlaI CTCGAG 1 cut(s) 477
SmlI CTYRAG 3 cut(s) 477, 1324, 1743
SmoI CTYRAG 3 cut(s) 477, 1324, 1743
SnaBI TACGTA 1 cut(s) 1336
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 6 cut(s) 83, 112, 573, 712, 843, 957
SsiI CCGC 4 cut(s) 312, 414, 1392, 1700
SspMI CTAG 4 cut(s) 282, 338, 1020, 1305
StyD4I CCNGG 2 cut(s) 418, 1104
StyI CCWWGG 3 cut(s) 15, 271, 1725
TaaI ACNGT 5 cut(s) 239, 373, 619, 698, 1737
TaiI ACGT 3 cut(s) 136, 360, 1338
TaqI TCGA 5 cut(s) 116, 231, 478, 831, 1404
TasI AATT 6 cut(s) 83, 112, 573, 712, 843, 957
TatI WGTACW 3 cut(s) 853, 1307, 1545
TfiI GAWTC 6 cut(s) 107, 625, 777, 1184, 1205, 1469
Tru1I TTAA 7 cut(s) 399, 621, 678, 756, 1044, 1374, 1758
Tru9I TTAA 7 cut(s) 399, 621, 678, 756, 1044, 1374, 1758
TscAI CASTG 2 cut(s) 199, 1021
TseI GCWGC 4 cut(s) 508, 722, 1214, 1730
TspDTI ATGAA 9 cut(s) 306, 333, 779, 986, 993, 1170, 1516, 1532, 1556
TspGWI ACGGA 1 cut(s) 1306
TspRI CASTG 2 cut(s) 199, 1021
XagI CCTNNNNNAGG 1 cut(s) 1643
XapI RAATTY 1 cut(s) 957
XceI RCATGY 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 477
XmiI GTMKAC 1 cut(s) 1610
XmnI GAANNNNTTC 3 cut(s) 1297, 1523, 1583
XspI CTAG 4 cut(s) 282, 338, 1020, 1305
ZrmI AGTACT 2 cut(s) 1309, 1547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.