Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Reverse (-)

27255448 .. 27258320

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGGATGCGTGGTGGTCCCTGTTAGCTGCTATCCCTGCAGTGGTTGCAGGACAAGCATATCGGGTCAAGAAAAGGCGCACTGAAGAGCAGAGATTAAAGAGTGCTAGGGGAAGGGAGAAGAGTTCTGATGAGATTTTTGTCTGTGAGAGGGTATGCACATCAAAGAGAATGCTCAAAAAGGTAGGTGCATTCTCAAAGGACCCTATTCCTGATACATGTGTTACTGTATGTGGTGTCTCTGAGCTCGATGCATGCGCTGATGCATGTGCGCGCACTGTTTGCGTGAACCAACACCAAGTGCCCAACTGGAATGACATCTGCCTTCGGAGATGCCAGAGTGAATGTCTAAAACTCTCTTCCTCCAGTTCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

125

Amino Acids

13.87

Weight (kDa)

8.88

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	218
AluBI	AGCT	2 cut(s)	29, 247
AluI	AGCT	2 cut(s)	29, 247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	4 cut(s)	81, 260, 274, 276
AspS9I	GGNCC	2 cut(s)	18, 202
AvaII	GGWCC	2 cut(s)	18, 202
BaeGI	GKGCMC	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	18, 202
BmgT120I	GGNCC	2 cut(s)	18, 202
BmiI	GGNNCC	2 cut(s)	20, 204
BmsI	GCATC	3 cut(s)	241, 253, 323
BpmI	CTGGAG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	314, 366
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	314, 366
BsePI	GCGCGC	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	4
BsmI	GAATGC	2 cut(s)	177, 191
Bsp1286I	GDGCHC	2 cut(s)	249, 306
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	20, 204
BspMAI	CTGCAG	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	314, 366
BssHII	GCGCGC	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	229, 280
Bst6I	CTCTTC	3 cut(s)	81, 116, 364
BstAPI	GCANNNNNTGC	2 cut(s)	47, 282
BstC8I	GCNNGC	2 cut(s)	256, 274
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	274
BstHHI	GCGC	4 cut(s)	81, 260, 274, 276
BstMAI	GTCTC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
BstNSI	RCATGY	3 cut(s)	222, 258, 270
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	48, 81, 276
Cac8I	GCNNGC	2 cut(s)	256, 274
CfoI	GCGC	4 cut(s)	81, 260, 274, 276
Cfr13I	GGNCC	2 cut(s)	18, 202
CviAII	CATG	3 cut(s)	219, 255, 267
CviJI	RGCY	2 cut(s)	29, 247
CviKI_1	RGCY	2 cut(s)	29, 247
DdeI	CTNAG	1 cut(s)	243
DraIII	CACNNNGTG	1 cut(s)	301
Eam1104I	CTCTTC	3 cut(s)	81, 116, 364
EarI	CTCTTC	3 cut(s)	81, 116, 364
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	18, 202
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT22I	ATGCAT	2 cut(s)	256, 268
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	3 cut(s)	222, 258, 270
FaiI	YATR	6 cut(s)	61, 157, 220, 232, 256, 268
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	3 cut(s)	218, 254, 266
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	4 cut(s)	80, 259, 273, 275
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	349
HhaI	GCGC	4 cut(s)	81, 260, 274, 276
Hin1II	CATG	3 cut(s)	222, 258, 270
Hin6I	GCGC	4 cut(s)	79, 258, 272, 274
HinP1I	GCGC	4 cut(s)	79, 258, 272, 274
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	130, 244, 330
Hpy188III	TCNNGA	2 cut(s)	70, 212
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	108, 335
HpyCH4III	ACNGT	2 cut(s)	229, 280
HpyCH4V	TGCA	6 cut(s)	41, 50, 159, 191, 254, 266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	222, 258, 270
HspAI	GCGC	4 cut(s)	79, 258, 272, 274
LguI	GCTCTTC	1 cut(s)	81
LpnPI	CCDG	6 cut(s)	35, 36, 51, 225, 295, 350
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	241, 253, 323
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	4 cut(s)	98, 133, 351, 363
MhlI	GDGCHC	2 cut(s)	249, 306
MnlI	CCTC	2 cut(s)	144, 373
Mph1103I	ATGCAT	2 cut(s)	256, 268
MseI	TTAA	1 cut(s)	98
Mva1269I	GAATGC	2 cut(s)	177, 191
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 56, 282
NlaIII	CATG	3 cut(s)	222, 258, 270
NlaIV	GGNNCC	2 cut(s)	20, 204
NsiI	ATGCAT	2 cut(s)	256, 268
NspI	RCATGY	3 cut(s)	222, 258, 270
PaeI	GCATGC	1 cut(s)	258
PauI	GCGCGC	1 cut(s)	272
PciI	ACATGT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	81
PctI	GAATGC	2 cut(s)	177, 191
PkrI	GCNGC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	202
PscI	ACATGT	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	20, 204
PspPI	GGNCC	2 cut(s)	18, 202
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	43
PteI	GCGCGC	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	18, 202
SduI	GDGCHC	2 cut(s)	249, 306
SetI	ASST	4 cut(s)	31, 186, 190, 249
SfaNI	GCATC	3 cut(s)	241, 253, 323
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	2 cut(s)	18, 202
SphI	GCATGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	229, 280
TaqI	TCGA	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	3 cut(s)	48, 88, 283
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	3 cut(s)	48, 88, 283
VpaK11BI	GGWCC	2 cut(s)	18, 202
XceI	RCATGY	3 cut(s)	222, 258, 270
XspI	CTAG	1 cut(s)	108
Zsp2I	ATGCAT	2 cut(s)	256, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.