Rw5G046630

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000787
Physical Location & Seq
Reverse (-)
80887564 .. 80890189
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046630.1

Sequence Viewer

Length: 582 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGGCGGCTGTGGCGGCGTTCCAAGAAGGGGTCGGGCTAGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTTGAGAACGAGTGGGGTGGCCGTGACTCGCGCCTCAAGGCCGAGCAACTCCTCTCCGATATCGTCTCCTGGGTCAATCACTCCACCGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTCTCTCAATACTGTGATAGAGGATGGTAGCATTGAGGAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAAGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCAACTCTTCATGTTAAACAGGTTGTGGATGACGATGAAGACAGTGATGATGATGATGATGATACTGATCCTAGCATGAATAAAGATGAGTCATCAAACATGAATGTGGACAAACCAGAGTCTCATGCAGTAGCGCCAAAGACCAGGCAGGCAGTTGAAGCAGAAGATGGTTGGGAGGTAGTCGGACCAAGAAGAAGTAGGGGTAAAAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

193

Amino Acids

21.65

Weight (kDa)

4.4

Isoelectric Point (pI)

65.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 94 1.9e-25 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 73, 127
AciI CCGC 4 cut(s) 26, 29, 38, 73
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 2 cut(s) 93, 115
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 5 cut(s) 89, 224, 325, 335, 524
AjnI CCWGG 2 cut(s) 164, 509
AluBI AGCT 3 cut(s) 19, 227, 278
AluI AGCT 3 cut(s) 19, 227, 278
Alw26I GTCTC 2 cut(s) 166, 492
AlwI GGATC 1 cut(s) 428
AoxI GGCC 3 cut(s) 93, 115, 135
AspLEI GCGC 3 cut(s) 85, 129, 502
AspS9I GGNCC 1 cut(s) 551
AvaII GGWCC 1 cut(s) 551
AxyI CCTNAGG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 411
BccI CCATC 2 cut(s) 251, 527
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 2 cut(s) 166, 511
BcoDI GTCTC 2 cut(s) 166, 492
BfaI CTAG 2 cut(s) 62, 438
BfoI RGCGCY 2 cut(s) 86, 503
BisI GCNGC 3 cut(s) 27, 30, 39
BlsI GCNGC 3 cut(s) 28, 31, 40
Bme1390I CCNGG 2 cut(s) 166, 511
Bme18I GGWCC 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 166, 511
BpiI GAAGAC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse21I CCTNAGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 2 cut(s) 166, 511
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 262, 400
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 137, 284
Bsh1236I CGCG 2 cut(s) 73, 127
BshFI GGCC 3 cut(s) 95, 117, 137
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 166, 492
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 3 cut(s) 95, 117, 137
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 4 cut(s) 26, 29, 38, 73
BspANI GGCC 3 cut(s) 95, 117, 137
BspFNI CGCG 2 cut(s) 73, 127
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 433
Bst2UI CCWGG 2 cut(s) 166, 511
Bst4CI ACNGT 2 cut(s) 247, 410
Bst6I CTCTTC 2 cut(s) 355, 378
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 2 cut(s) 9, 341
BstF5I GGATG 2 cut(s) 262, 400
BstFNI CGCG 2 cut(s) 73, 127
BstH2I RGCGCY 2 cut(s) 86, 503
BstHHI GCGC 3 cut(s) 85, 129, 502
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 2 cut(s) 166, 492
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 3 cut(s) 35, 38, 524
BstNI CCWGG 2 cut(s) 166, 511
BstSCI CCNGG 2 cut(s) 164, 509
BstUI CGCG 2 cut(s) 73, 127
BstV2I GAAGAC 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 3 cut(s) 95, 117, 137
BtsCI GGATG 2 cut(s) 262, 400
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 516
CfoI GCGC 3 cut(s) 85, 129, 502
Cfr13I GGNCC 1 cut(s) 551
CviAII CATG 5 cut(s) 299, 377, 442, 466, 491
DdeI CTNAG 2 cut(s) 9, 341
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 2 cut(s) 355, 378
EarI CTCTTC 2 cut(s) 355, 378
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 551
Eco81I CCTNAGG 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 164, 509
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 5 cut(s) 302, 380, 445, 469, 494
FaiI YATR 9 cut(s) 195, 197, 230, 296, 300, 378, 443, 467, 492
FatI CATG 5 cut(s) 298, 376, 441, 465, 490
Fnu4HI GCNGC 3 cut(s) 27, 30, 39
FokI GGATG 2 cut(s) 269, 407
Fsp4HI GCNGC 3 cut(s) 27, 30, 39
FspBI CTAG 2 cut(s) 62, 438
GlaI GCGC 3 cut(s) 84, 128, 501
GluI GCNGC 3 cut(s) 27, 30, 39
HaeII RGCGCY 2 cut(s) 86, 503
HaeIII GGCC 3 cut(s) 95, 117, 137
HhaI GCGC 3 cut(s) 85, 129, 502
Hin1II CATG 5 cut(s) 302, 380, 445, 469, 494
Hin6I GCGC 3 cut(s) 83, 127, 500
HinP1I GCGC 3 cut(s) 83, 127, 500
HinfI GANTC 3 cut(s) 122, 455, 485
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 2 cut(s) 154, 551
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 247, 410
HpyCH4V TGCA 3 cut(s) 298, 318, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 38, 524
HpyF3I CTNAG 2 cut(s) 9, 341
Hsp92II CATG 5 cut(s) 302, 380, 445, 469, 494
HspAI GCGC 3 cut(s) 83, 127, 500
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 21, 151, 178, 371, 495, 496, 500, 523
MaeI CTAG 2 cut(s) 62, 438
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 7 cut(s) 221, 314, 365, 372, 416, 542, 570
MfeI CAATTG 1 cut(s) 89
MluCI AATT 3 cut(s) 89, 319, 577
MlyI GAGTC 3 cut(s) 116, 464, 494
MmeI TCCRAC 2 cut(s) 392, 529
MnlI CCTC 7 cut(s) 140, 158, 198, 247, 262, 265, 535
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 470
MspR9I CCNGG 2 cut(s) 166, 511
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 2 cut(s) 166, 511
MvnI CGCG 2 cut(s) 73, 127
MwoI GCNNNNNNNGC 3 cut(s) 35, 38, 524
NdeII GATC 1 cut(s) 433
NlaIII CATG 5 cut(s) 302, 380, 445, 469, 494
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 300
PkrI GCNGC 3 cut(s) 28, 31, 40
PleI GAGTC 3 cut(s) 116, 463, 493
PpsI GAGTC 3 cut(s) 116, 463, 493
Psp6I CCWGG 2 cut(s) 164, 509
PspGI CCWGG 2 cut(s) 164, 509
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 551
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 27, 30, 39
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 3 cut(s) 116, 464, 494
ScrFI CCNGG 2 cut(s) 166, 511
SetI ASST 7 cut(s) 21, 190, 229, 276, 280, 390, 546
SinI GGWCC 1 cut(s) 551
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 89, 319, 577
SsiI CCGC 4 cut(s) 26, 29, 38, 73
SspMI CTAG 2 cut(s) 62, 438
StyD4I CCNGG 2 cut(s) 164, 509
TaaI ACNGT 2 cut(s) 247, 410
TaqI TCGA 1 cut(s) 358
TasI AATT 3 cut(s) 89, 319, 577
TauI GCSGC 3 cut(s) 29, 32, 41
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 5 cut(s) 315, 365, 417, 458, 482
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 551
XspI CTAG 2 cut(s) 62, 438
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.