Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014404.1

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

7312 .. 8474

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014404.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgggtcagagagatacccaacatcagcaaaaccttccaaaacacatgtcgttttgggatggggatagagaacgcaggccagcgtctgggccaataacagatcgacacgtgtatgaagtgggactgaggtcaaagcatgaaaagcaggagataataactcagcttggttgcatcgacctccgcctctcctcatcgtctcctacccatctcctctgccaaatctctcaaaccagaatcaccgccttcccctcctccaccagctgcgacatcatctgcggtgtccctacaccaccctccccgtcgccacctgcatcagcgtctcccatgacatcctcatggccgactgcgactgtgttccaagaatgggtccgattagttctattgcggtggtcgacgcttcaattggtcgtcgagaacgagtggggtagccgtgactcgagcctcaagaccgagcaactcgtctccgatgtcgtctcctgggatttcaagcccagccaggtctacctcatcatcaaggacctcgtcaccagcagcccttgcattctcgagaccttcgtgctgctcagagtcgtcgggttgaaggtcagtgacgctgtcgttttgatcggccgggctaaggagttgttatctcctgctcttcattgctttggcctcaattcccacttcatacacgtacgtgtcaatgtattattggtcctggtcagcccaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

237

Amino Acids

26.39

Weight (kDa)

7.69

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccI	GTMKAC	2 cut(s)	392, 501
AciI	CCGC	4 cut(s)	181, 240, 276, 385
AcoI	YGGCCR	2 cut(s)	338, 607
AcvI	CACGTG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	3 cut(s)	86, 364, 616
AflIII	ACRYGT	5 cut(s)	45, 106, 108, 670, 676
AgsI	TTSAA	3 cut(s)	401, 487, 580
AjnI	CCWGG	3 cut(s)	476, 495, 696
AleI	CACNNNNGTG	1 cut(s)	675
AluBI	AGCT	3 cut(s)	163, 261, 711
AluI	AGCT	3 cut(s)	163, 261, 711
Alw26I	GTCTC	5 cut(s)	201, 324, 466, 478, 542
AlwNI	CAGNNNCTG	1 cut(s)	86
Ama87I	CYCGRG	2 cut(s)	436, 545
AoxI	GGCC	5 cut(s)	77, 89, 338, 607, 649
ApeKI	GCWGC	3 cut(s)	261, 531, 559
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspS9I	GGNCC	4 cut(s)	89, 367, 517, 694
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	2 cut(s)	229, 517
AvaI	CYCGRG	2 cut(s)	436, 545
AvaII	GGWCC	3 cut(s)	367, 517, 694
BbrPI	CACGTG	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	248, 543, 546
BccI	CCATC	2 cut(s)	53, 213
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	3 cut(s)	478, 497, 698
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	5 cut(s)	201, 324, 466, 478, 542
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	3 cut(s)	262, 532, 560
BlsI	GCNGC	3 cut(s)	263, 533, 561
Bme1390I	CCNGG	4 cut(s)	478, 497, 611, 698
Bme18I	GGWCC	3 cut(s)	367, 517, 694
BmeT110I	CYCGRG	2 cut(s)	436, 545
BmgT120I	GGNCC	4 cut(s)	89, 367, 517, 694
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	4 cut(s)	478, 497, 611, 698
BmsI	GCATC	2 cut(s)	180, 320
BoxI	GACNNNNGTC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	611
BsaAI	YACGTR	3 cut(s)	109, 673, 677
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 364, 616
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	3 cut(s)	478, 497, 698
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	2 cut(s)	64, 329
BseLI	CCNNNNNNNGG	3 cut(s)	86, 364, 616
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	3 cut(s)	116, 173, 577
BseRI	GAGGAG	3 cut(s)	178, 200, 241
BseX3I	CGGCCG	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	248, 543, 546
BseYI	CCCAGC	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	5 cut(s)	79, 91, 340, 609, 651
BsiEI	CGRYCG	1 cut(s)	610
BsiHKCI	CYCGRG	2 cut(s)	436, 545
BsiSI	CCGG	1 cut(s)	610
BsiWI	CGTACG	1 cut(s)	673
BslFI	GGGAC	2 cut(s)	135, 266
BslI	CCNNNNNNNGG	3 cut(s)	86, 364, 616
BsmAI	GTCTC	5 cut(s)	201, 324, 466, 478, 542
BsmBI	CGTCTC	4 cut(s)	201, 324, 466, 478
BsmFI	GGGAC	2 cut(s)	135, 266
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	5 cut(s)	79, 91, 340, 609, 651
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	2 cut(s)	436, 545
Bsp143I	GATC	2 cut(s)	100, 603
BspACI	CCGC	4 cut(s)	181, 240, 276, 385
BspANI	GGCC	5 cut(s)	79, 91, 340, 609, 651
BspCNI	CTCAG	3 cut(s)	117, 172, 576
BspLI	GGNNCC	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	642
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	2 cut(s)	100, 603
Bst2UI	CCWGG	3 cut(s)	478, 497, 698
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	642
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstBAI	YACGTR	3 cut(s)	109, 673, 677
BstC8I	GCNNGC	2 cut(s)	77, 81
BstDEI	CTNAG	4 cut(s)	125, 159, 563, 615
BstF5I	GGATG	2 cut(s)	64, 329
BstKTI	GATC	2 cut(s)	103, 606
BstMAI	GTCTC	5 cut(s)	201, 324, 466, 478, 542
BstMBI	GATC	2 cut(s)	100, 603
BstMCI	CGRYCG	1 cut(s)	610
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 537
BstNI	CCWGG	3 cut(s)	478, 497, 698
BstNSI	RCATGY	1 cut(s)	49
BstPAI	GACNNNNGTC	1 cut(s)	127
BstSCI	CCNGG	4 cut(s)	476, 495, 609, 696
BstV1I	GCAGC	3 cut(s)	248, 543, 546
BstZI	CGGCCG	1 cut(s)	607
BsuRI	GGCC	5 cut(s)	79, 91, 340, 609, 651
BtsCI	GGATG	2 cut(s)	64, 329
BtsIMutI	CAGTG	1 cut(s)	592
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	77, 81
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr13I	GGNCC	4 cut(s)	89, 367, 517, 694
CseI	GACGC	4 cut(s)	72, 306, 403, 599
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	4 cut(s)	46, 137, 325, 336
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	4 cut(s)	125, 159, 563, 615
DpnI	GATC	2 cut(s)	102, 605
DpnII	GATC	2 cut(s)	100, 603
EaeI	YGGCCR	2 cut(s)	338, 607
EagI	CGGCCG	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	3 cut(s)	367, 517, 694
Eco52I	CGGCCG	1 cut(s)	607
Eco72I	CACGTG	1 cut(s)	109
Eco88I	CYCGRG	2 cut(s)	436, 545
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	3 cut(s)	476, 495, 696
Esp3I	CGTCTC	4 cut(s)	201, 324, 466, 478
FaeI	CATG	4 cut(s)	49, 140, 328, 339
FaiI	YATR	6 cut(s)	47, 114, 138, 326, 337, 668
FaqI	GGGAC	2 cut(s)	135, 266
FatI	CATG	4 cut(s)	45, 136, 324, 335
FblI	GTMKAC	2 cut(s)	392, 501
Fnu4HI	GCNGC	3 cut(s)	262, 532, 560
FokI	GGATG	2 cut(s)	71, 316
Fsp4HI	GCNGC	3 cut(s)	262, 532, 560
GluI	GCNGC	3 cut(s)	262, 532, 560
GsaI	CCCAGC	1 cut(s)	495
HaeIII	GGCC	5 cut(s)	79, 91, 340, 609, 651
HapII	CCGG	1 cut(s)	610
HgaI	GACGC	4 cut(s)	72, 306, 403, 599
Hin1II	CATG	4 cut(s)	49, 140, 328, 339
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	3 cut(s)	234, 434, 567
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	2 cut(s)	229, 517
Hpy166II	GTNNAC	2 cut(s)	393, 502
Hpy188I	TCNGA	4 cut(s)	9, 371, 466, 566
Hpy188III	TCNNGA	4 cut(s)	412, 445, 545, 547
Hpy8I	GTNNAC	2 cut(s)	393, 502
Hpy99I	CGWCG	4 cut(s)	304, 397, 413, 575
HpyAV	CCTTC	4 cut(s)	44, 253, 562, 574
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	3 cut(s)	108, 672, 676
HpyCH4V	TGCA	3 cut(s)	171, 311, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 537
HpyF3I	CTNAG	4 cut(s)	125, 159, 563, 615
HpySE526I	ACGT	3 cut(s)	108, 672, 676
Hsp92II	CATG	4 cut(s)	49, 140, 328, 339
Kzo9I	GATC	2 cut(s)	100, 603
LguI	GCTCTTC	1 cut(s)	642
Lsp1109I	GCAGC	3 cut(s)	248, 543, 546
LweI	GCATC	2 cut(s)	180, 320
MaeII	ACGT	3 cut(s)	108, 672, 676
MaeIII	GTNAC	3 cut(s)	431, 523, 587
MalI	GATC	2 cut(s)	102, 605
MboI	GATC	2 cut(s)	100, 603
MboII	GAAGA	1 cut(s)	629
MfeI	CAATTG	1 cut(s)	401
MluCI	AATT	2 cut(s)	401, 655
MlyI	GAGTC	2 cut(s)	428, 576
MslI	CAYNNNNRTG	3 cut(s)	111, 334, 675
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	4 cut(s)	478, 497, 611, 698
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	3 cut(s)	478, 497, 698
MwoI	GCNNNNNNNGC	2 cut(s)	142, 537
NciI	CCSGG	1 cut(s)	611
NdeII	GATC	2 cut(s)	100, 603
NlaIII	CATG	4 cut(s)	49, 140, 328, 339
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	3 cut(s)	431, 523, 587
NspI	RCATGY	1 cut(s)	49
OliI	CACNNNNGTG	1 cut(s)	675
PaeR7I	CTCGAG	2 cut(s)	436, 545
PaqCI	CACCTGC	1 cut(s)	316
PciI	ACATGT	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	2 cut(s)	414, 552
PctI	GAATGC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	234
Pfl23II	CGTACG	1 cut(s)	673
PflFI	GACNNNGTC	2 cut(s)	521, 593
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	263, 533, 561
PleI	GAGTC	2 cut(s)	428, 575
PmaCI	CACGTG	1 cut(s)	109
PmlI	CACGTG	1 cut(s)	109
PpsI	GAGTC	2 cut(s)	428, 575
Ppu21I	YACGTR	3 cut(s)	109, 673, 677
PpuMI	RGGWCCY	1 cut(s)	517
PscI	ACATGT	1 cut(s)	45
PshAI	GACNNNNGTC	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	3 cut(s)	476, 495, 696
PspCI	CACGTG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	3 cut(s)	476, 495, 696
PspLI	CGTACG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	4 cut(s)	89, 367, 517, 694
PspPPI	RGGWCCY	1 cut(s)	517
PspXI	VCTCGAGB	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	86
PsyI	GACNNNGTC	2 cut(s)	521, 593
PvuII	CAGCTG	1 cut(s)	261
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
RseI	CAYNNNNRTG	3 cut(s)	111, 334, 675
SalI	GTCGAC	1 cut(s)	391
SapI	GCTCTTC	1 cut(s)	642
SatI	GCNGC	3 cut(s)	262, 532, 560
Sau3AI	GATC	2 cut(s)	100, 603
Sau96I	GGNCC	4 cut(s)	89, 367, 517, 694
SchI	GAGTC	2 cut(s)	428, 576
ScrFI	CCNGG	4 cut(s)	478, 497, 611, 698
SfaNI	GCATC	2 cut(s)	180, 320
Sfr274I	CTCGAG	2 cut(s)	436, 545
SinI	GGWCC	3 cut(s)	367, 517, 694
SlaI	CTCGAG	2 cut(s)	436, 545
SmiMI	CAYNNNNRTG	3 cut(s)	111, 334, 675
SmlI	CTYRAG	3 cut(s)	436, 443, 545
SmoI	CTYRAG	3 cut(s)	436, 443, 545
Sse9I	AATT	2 cut(s)	401, 655
SsiI	CCGC	4 cut(s)	181, 240, 276, 385
StyD4I	CCNGG	4 cut(s)	476, 495, 609, 696
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	3 cut(s)	111, 675, 679
TaqI	TCGA	6 cut(s)	103, 174, 392, 411, 437, 546
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	2 cut(s)	401, 655
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	3 cut(s)	431, 523, 587
TseI	GCWGC	3 cut(s)	261, 531, 559
Tsp45I	GTSAC	3 cut(s)	431, 523, 587
TspDTI	ATGAA	4 cut(s)	129, 153, 629, 655
TspRI	CASTG	1 cut(s)	592
Tth111I	GACNNNGTC	2 cut(s)	521, 593
Van91I	CCANNNNNTGG	1 cut(s)	86
VpaK11BI	GGWCC	3 cut(s)	367, 517, 694
XceI	RCATGY	1 cut(s)	49
XhoI	CTCGAG	2 cut(s)	436, 545
XmiI	GTMKAC	2 cut(s)	392, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.