Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

27255448 .. 27256617

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0259200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACAAATTTAGCAGAAGAACTGCACTTCTCCTCTTCTGGTTCATCATCGTCTCACTACAGATTCCAAAAACAATTGGAGAAGAAGGACAACAGAATGAGGAGCAGCAAACCTATTATACAAAGACACTGTCTGTGCTGCAAGACACAGTCTCTATGCTGCAAAAGTCTCATCAATCTGCCTGGGATAAGATGAAAACCGTCATATCAGATATGCAGATGCAGTTTATGCCTCCATCTTTAGATTTCAGGGGGCAGGATAAAAAGGACGAAAATGAGGGTGAAGGCGTGGGAGATAAGATGAAAGACGCAGCTCAGAAGAGCTTCGAAACAAGCAAACATACAGTAGAGGAATCAGCTAAATCAGCTGCTGAGGCTGTGCACAAGACAGCAGAGAAGGTAAAGGAAGCTGTTGCCAGTGATGAGTCTGCTGCAGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

147

Amino Acids

16.57

Weight (kDa)

5.13

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	6 cut(s)	314, 324, 359, 368, 410, 439
AluI	AGCT	6 cut(s)	314, 324, 359, 368, 410, 439
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	3 cut(s)	58, 157, 174
Alw44I	GTGCAC	1 cut(s)	380
AlwNI	CAGNNNCTG	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	380
ApeKI	GCWGC	6 cut(s)	106, 139, 160, 311, 368, 431
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
Asp700I	GAANNNNTTC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	293
AsuII	TTCGAA	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	6 cut(s)	118, 126, 147, 323, 355, 418
BccI	CCATC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	58, 157, 174
BfmI	CTRYAG	2 cut(s)	59, 432
BisI	GCNGC	6 cut(s)	107, 140, 161, 312, 369, 432
BlsI	GCNGC	6 cut(s)	108, 141, 162, 313, 370, 433
Bme1390I	CCNGG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	329, 363
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	2 cut(s)	23, 116
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	6 cut(s)	118, 126, 147, 323, 355, 418
BsgI	GTGCAG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	384
BsmAI	GTCTC	3 cut(s)	58, 157, 174
BsmBI	CGTCTC	1 cut(s)	58
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	384
BspCNI	CTCAG	2 cut(s)	328, 364
BspMAI	CTGCAG	1 cut(s)	436
BspQI	GCTCTTC	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	4 cut(s)	132, 151, 202, 346
Bst6I	CTCTTC	2 cut(s)	41, 314
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	315, 372
BstMAI	GTCTC	3 cut(s)	58, 157, 174
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 365, 374
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	59, 432
BstSLI	GKGCMC	1 cut(s)	384
BstV1I	GCAGC	6 cut(s)	118, 126, 147, 323, 355, 418
BtsIMutI	CAGTG	2 cut(s)	128, 424
CaiI	CAGNNNCTG	1 cut(s)	371
CseI	GACGC	1 cut(s)	317
CviJI	RGCY	7 cut(s)	314, 324, 359, 368, 377, 410, 439
CviKI_1	RGCY	7 cut(s)	314, 324, 359, 368, 377, 410, 439
DdeI	CTNAG	2 cut(s)	315, 372
Eam1104I	CTCTTC	2 cut(s)	41, 314
EarI	CTCTTC	2 cut(s)	41, 314
EcoRII	CCWGG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	58
FaiI	YATR	6 cut(s)	120, 158, 206, 215, 230, 342
Fnu4HI	GCNGC	6 cut(s)	107, 140, 161, 312, 369, 432
Fsp4HI	GCNGC	6 cut(s)	107, 140, 161, 312, 369, 432
GluI	GCNGC	6 cut(s)	107, 140, 161, 312, 369, 432
HgaI	GACGC	1 cut(s)	317
HinfI	GANTC	3 cut(s)	64, 353, 425
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	211, 318
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	3 cut(s)	80, 278, 391
HpyCH4III	ACNGT	4 cut(s)	132, 151, 202, 346
HpyCH4V	TGCA	7 cut(s)	26, 142, 163, 217, 223, 382, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 365, 374
HpyF3I	CTNAG	2 cut(s)	315, 372
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	25, 169, 196, 235, 242, 430
Lsp1109I	GCAGC	6 cut(s)	118, 126, 147, 323, 355, 418
LweI	GCATC	1 cut(s)	210
MboII	GAAGA	4 cut(s)	28, 30, 95, 331
MfeI	CAATTG	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	2 cut(s)	8, 75
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	6 cut(s)	44, 94, 243, 271, 343, 367
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	3 cut(s)	229, 365, 374
NspV	TTCGAA	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	64, 353
PflFI	GACNNNGTC	2 cut(s)	130, 149
PkrI	GCNGC	6 cut(s)	108, 141, 162, 313, 370, 433
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	371
PsyI	GACNNNGTC	2 cut(s)	130, 149
PvuII	CAGCTG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	6 cut(s)	107, 140, 161, 312, 369, 432
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	8 cut(s)	116, 316, 326, 361, 370, 402, 412, 441
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	2 cut(s)	59, 432
SfuI	TTCGAA	1 cut(s)	327
Sse9I	AATT	2 cut(s)	8, 75
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	4 cut(s)	132, 151, 202, 346
TaqI	TCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	8, 75
TfiI	GAWTC	2 cut(s)	64, 353
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TscAI	CASTG	2 cut(s)	135, 424
TseI	GCWGC	6 cut(s)	106, 139, 160, 311, 368, 431
TspDTI	ATGAA	3 cut(s)	34, 209, 317
TspRI	CASTG	2 cut(s)	135, 424
Tth111I	GACNNNGTC	2 cut(s)	130, 149
VneI	GTGCAC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.