RLG00000029497

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000787
Physical Location & Seq
Reverse (-)
39512732 .. 39514013
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029497

Sequence Viewer

Length: 516 bp
ATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAAGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCACGTTAAACAGGTTGTCAATGATGAAGAAGACAGTGACGAGGATGATGATGTTACTGATCCTAGCATGAATAAAGATGATTCATCAAACATGATTGTGGACAAACCAGAGTCTCATGCAGTAGAGCCAAAGACCAAGCAGGCAGTTGAAGCGGAAGGTGGTTGGGAGGTAGTCGGACCAAGAAGAAGTAGGGGTAAAAGGAATAAGGTTGAACCCCTTATATGCAAACCCCTGGCCAGGGCTAGTATGATTATGAACGTCACGTCCACGGTTTTTGCGAGGCAAGATGCTTTGGAGGGAAGGCCAATTGGGACGGATTTGCTTCGCGCCACCGATGAAGTCATTTGTGGTGCCAGGAGCAAAGTTGATCCAGCAGTAGGAATCTCCTTTGAAAATGTATGCCTCGGTATGGCGGAGCTAGGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

172

Amino Acids

18.86

Weight (kDa)

4.83

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 437
AccII CGCG 1 cut(s) 414
AciI CCGC 2 cut(s) 239, 500
AclWI GGATC 2 cut(s) 140, 449
AcoI YGGCCR 1 cut(s) 321
AfiI CCNNNNNNNGG 4 cut(s) 324, 325, 464, 496
AgsI TTSAA 5 cut(s) 37, 47, 236, 299, 479
AjiI CACGTC 1 cut(s) 351
AjnI CCWGG 3 cut(s) 318, 323, 440
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 1 cut(s) 505
AluI AGCT 1 cut(s) 505
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 2 cut(s) 140, 449
AoxI GGCC 2 cut(s) 321, 389
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 263
AvaII GGWCC 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 53
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 1 cut(s) 437
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
BbsI GAAGAC 1 cut(s) 123
BciT130I CCWGG 3 cut(s) 320, 325, 442
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 3 cut(s) 150, 330, 506
Bme1390I CCNGG 3 cut(s) 320, 325, 442
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 3 cut(s) 320, 325, 442
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 318, 324, 354, 490
Bsc4I CCNNNNNNNGG 4 cut(s) 324, 325, 464, 496
Bse21I CCTNAGG 1 cut(s) 53
BseBI CCWGG 3 cut(s) 320, 325, 442
BseDI CCNNGG 4 cut(s) 318, 324, 354, 490
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 4 cut(s) 324, 325, 464, 496
BseRI GAGGAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 2 cut(s) 323, 391
BshNI GGYRCC 1 cut(s) 437
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 4 cut(s) 324, 325, 464, 496
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 2 cut(s) 323, 391
Bsp143I GATC 2 cut(s) 145, 454
BspACI CCGC 2 cut(s) 239, 500
BspANI GGCC 2 cut(s) 323, 391
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 439
BspPI GGATC 2 cut(s) 140, 449
BspT107I GGYRCC 1 cut(s) 437
BssECI CCNNGG 4 cut(s) 318, 324, 354, 490
BssMI GATC 2 cut(s) 145, 454
Bst2UI CCWGG 3 cut(s) 320, 325, 442
Bst4CI ACNGT 2 cut(s) 122, 358
Bst6I CTCTTC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 2 cut(s) 148, 457
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 2 cut(s) 145, 454
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 3 cut(s) 320, 325, 442
BstSCI CCNGG 3 cut(s) 318, 323, 440
BstUI CGCG 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 123
Bsu36I CCTNAGG 1 cut(s) 53
BsuRI GGCC 2 cut(s) 323, 391
BtgI CCRYGG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 228
CfoI GCGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 263
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 4 cut(s) 11, 154, 178, 203
CviJI RGCY 7 cut(s) 51, 62, 214, 323, 329, 391, 505
CviKI_1 RGCY 7 cut(s) 51, 62, 214, 323, 329, 391, 505
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 147, 456
DpnII GATC 2 cut(s) 145, 454
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
EciI GGCGGA 1 cut(s) 515
Eco47I GGWCC 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 53
EcoRII CCWGG 3 cut(s) 318, 323, 440
EcoT22I ATGCAT 1 cut(s) 12
FaeI CATG 4 cut(s) 14, 157, 181, 206
FaqI GGGAC 1 cut(s) 412
FatI CATG 4 cut(s) 10, 153, 177, 202
FokI GGATG 1 cut(s) 143
FspBI CTAG 3 cut(s) 150, 330, 506
GlaI GCGC 1 cut(s) 415
HaeIII GGCC 2 cut(s) 323, 391
HhaI GCGC 1 cut(s) 416
Hin1II CATG 4 cut(s) 14, 157, 181, 206
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HinfI GANTC 3 cut(s) 167, 197, 468
Hpy166II GTNNAC 2 cut(s) 187, 354
Hpy188I TCNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 187, 354
HpyAV CCTTC 2 cut(s) 236, 381
HpyCH4III ACNGT 2 cut(s) 122, 358
HpyCH4IV ACGT 3 cut(s) 90, 345, 350
HpyCH4V TGCA 4 cut(s) 10, 30, 206, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 3 cut(s) 90, 345, 350
Hsp92II CATG 4 cut(s) 14, 157, 181, 206
HspAI GCGC 1 cut(s) 414
Kzo9I GATC 2 cut(s) 145, 454
LmnI GCTCC 2 cut(s) 444, 502
LweI GCATC 1 cut(s) 364
MaeI CTAG 3 cut(s) 150, 330, 506
MaeII ACGT 3 cut(s) 90, 345, 350
MaeIII GTNAC 3 cut(s) 122, 139, 346
MalI GATC 2 cut(s) 147, 456
MboI GATC 2 cut(s) 145, 454
MboII GAAGA 5 cut(s) 26, 84, 125, 128, 282
MfeI CAATTG 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 2 cut(s) 31, 393
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 6 cut(s) 96, 121, 247, 360, 376, 500
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 1 cut(s) 12
MscI TGGCCA 1 cut(s) 323
MseI TTAA 2 cut(s) 93, 514
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 320, 325, 442
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 3 cut(s) 320, 325, 442
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 2 cut(s) 145, 454
NlaIII CATG 4 cut(s) 14, 157, 181, 206
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 2 cut(s) 122, 346
NsiI ATGCAT 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PfeI GAWTC 2 cut(s) 167, 468
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 3 cut(s) 318, 323, 440
PspGI CCWGG 3 cut(s) 318, 323, 440
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 2 cut(s) 93, 514
Sau3AI GATC 2 cut(s) 145, 454
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 3 cut(s) 320, 325, 442
SetI ASST 8 cut(s) 93, 102, 247, 258, 297, 348, 353, 507
SfaNI GCATC 1 cut(s) 364
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 2 cut(s) 31, 393
SsiI CCGC 2 cut(s) 239, 500
SspMI CTAG 3 cut(s) 150, 330, 506
StyD4I CCNGG 3 cut(s) 318, 323, 440
TaaI ACNGT 2 cut(s) 122, 358
TaiI ACGT 3 cut(s) 93, 348, 353
TaqI TCGA 1 cut(s) 70
TasI AATT 2 cut(s) 31, 393
TfiI GAWTC 2 cut(s) 167, 468
Tru1I TTAA 2 cut(s) 93, 514
Tru9I TTAA 2 cut(s) 93, 514
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 2 cut(s) 122, 346
Tsp45I GTSAC 2 cut(s) 122, 346
TspDTI ATGAA 6 cut(s) 27, 126, 159, 170, 356, 438
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 263
XspI CTAG 3 cut(s) 150, 330, 506
Zsp2I ATGCAT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.