Rorug05G0447800

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000787
Physical Location & Seq
Forward (+)
61987100 .. 61987369
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0447800.1

Sequence Viewer

Length: 270 bp
ATGGCAGTTGCTGCTTCCAGATGGAGAAGCCGTTGTTGGAACTATGACGTCTTCATCAATTTTAGAGGTGAAGACACACGCAAAATCTTTGTCGGACATCTTTACAGAGCTCTCAAGCAGAAAGCAATTCACACATTCATCGATTCTGAAGAGCTTAGAAAAGGCAACCATCTCTCCAAGCTAATTGACGCTATTCACGACTCAAGGCTTTCGATTATAGTTTTATCAAAAAATTATGCGTCTTCCACTTGGTGCTTAATAGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

89

Amino Acids

10.41

Weight (kDa)

9.56

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 14 - 88 6e-25 TIR domain
TIR_2 PF13676 17 - 88 2.7e-12 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 48
AdeI CACNNNGTG 1 cut(s) 252
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 3 cut(s) 110, 154, 181
AluI AGCT 3 cut(s) 110, 154, 181
Alw21I GWGCWC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 11
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
AsuHPI GGTGA 1 cut(s) 80
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 3 cut(s) 43, 78, 234
Bbv12I GWGCWC 1 cut(s) 112
BccI CCATC 2 cut(s) 15, 177
BceAI ACGGC 1 cut(s) 15
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BpiI GAAGAC 3 cut(s) 43, 78, 234
BpuEI CTTGAG 2 cut(s) 98, 187
Bsa29I ATCGAT 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 48
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 158, 188
BseCI ATCGAT 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 112
BspDI ATCGAT 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV2I GAAGAC 3 cut(s) 43, 78, 234
Bsu15I ATCGAT 1 cut(s) 141
BsuTUI ATCGAT 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 2 cut(s) 197, 228
CviJI RGCY 5 cut(s) 30, 110, 154, 181, 208
CviKI_1 RGCY 5 cut(s) 30, 110, 154, 181, 208
DdeI CTNAG 1 cut(s) 155
DraIII CACNNNGTG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 112
FaiI YATR 4 cut(s) 45, 218, 237, 268
Fnu4HI GCNGC 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
HgaI GACGC 2 cut(s) 197, 228
Hin1I GRCGYC 1 cut(s) 48
HinfI GANTC 2 cut(s) 143, 200
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 95, 148
Hpy188III TCNNGA 2 cut(s) 18, 197
HpyCH4IV ACGT 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 48
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 1 cut(s) 31
MaeII ACGT 1 cut(s) 48
MboII GAAGA 4 cut(s) 43, 83, 161, 234
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 4 cut(s) 58, 126, 183, 232
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 2 cut(s) 17, 73
MnlI CCTC 1 cut(s) 59
MseI TTAA 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 1 cut(s) 12
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 112
SetI ASST 5 cut(s) 51, 70, 112, 156, 183
SgeI CNNG 7 cut(s) 30, 90, 127, 190, 209, 216, 261
SmlI CTYRAG 2 cut(s) 113, 202
SmoI CTYRAG 2 cut(s) 113, 202
Sse9I AATT 4 cut(s) 58, 126, 183, 232
SstI GAGCTC 1 cut(s) 112
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 141, 212
TasI AATT 4 cut(s) 58, 126, 183, 232
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 43, 127
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.