Rh7BG216700

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000787
Physical Location & Seq
Reverse (-)
18526487 .. 18527222
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG216700.1

Sequence Viewer

Length: 198 bp
ATGTTACAGAGAAGGGGGAGGTCGCGGTGGTCGGCGTTTCAATTGGCCGCCGAGAACGAGTGGGGTGGCCGTGACTCACACCCCAAGCCCGAGCAACTCGTCTTCGATGTCGTCTCCTGGGTCAATCACTCCATCGAGAAAGAAGAAGAGAAGGCACAAATGTTGAGGAAAAATGGAAAGATGTTGGAGCGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

65

Amino Acids

7.74

Weight (kDa)

9.69

Isoelectric Point (pI)

67.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 8 - 48 1.9e-08 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 190
AccII CGCG 1 cut(s) 25
AciI CCGC 3 cut(s) 25, 48, 190
AcoI YGGCCR 2 cut(s) 45, 67
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 2 cut(s) 45, 67
AvaI CYCGRG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 94
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 118
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 1 cut(s) 179
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 47, 69
BsiHKCI CYCGRG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 47, 69
BsoBI CYCGRG 1 cut(s) 89
BspACI CCGC 3 cut(s) 25, 48, 190
BspANI GGCC 2 cut(s) 47, 69
BspFNI CGCG 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 141
BstFNI CGCG 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 47, 69
CviJI RGCY 3 cut(s) 47, 69, 88
CviKI_1 RGCY 3 cut(s) 47, 69, 88
EaeI YGGCCR 2 cut(s) 45, 67
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 47, 69
HinfI GANTC 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 6, 145
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 2 cut(s) 103, 130
MaeIII GTNAC 2 cut(s) 3, 71
MbiI CCGCTC 1 cut(s) 190
MboII GAAGA 3 cut(s) 94, 155, 158
MfeI CAATTG 1 cut(s) 41
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 12, 159
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
SatI GCNGC 1 cut(s) 48
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 118
SetI ASST 1 cut(s) 23
Sse9I AATT 1 cut(s) 41
SsiI CCGC 3 cut(s) 25, 48, 190
StyD4I CCNGG 1 cut(s) 116
TaqI TCGA 2 cut(s) 105, 135
TasI AATT 1 cut(s) 41
TauI GCSGC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.