Rh5CG547900

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000787
Physical Location & Seq
Reverse (-)
76426510 .. 76429673
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG547900.1

Sequence Viewer

Length: 417 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGGCGGCTGTGGCGGCGTTCCAAGAAGGGGTCGGGCTAGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTTGAGAACGAGTGGGGTGGCCGTGACTCGCGCCTCAAGGCCGAGCAACTCCTCTCCGATATCGTCTCCTGGGTCAATCACTCCACCGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTCTCTCAATACTGTCATAGAGGATGGTAGCATTGAGGAGGTAGCTGAAAAAATGATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAAGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCAACTCTTCATGTTAAACAGGTAGGTTCTATTCAAAACCCTGTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

138

Amino Acids

15.49

Weight (kDa)

4.65

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 94 7.9e-26 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 73, 127
AciI CCGC 4 cut(s) 26, 29, 38, 73
AcoI YGGCCR 2 cut(s) 93, 115
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 5 cut(s) 89, 224, 325, 335, 401
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 3 cut(s) 19, 227, 278
AluI AGCT 3 cut(s) 19, 227, 278
Alw26I GTCTC 1 cut(s) 166
AoxI GGCC 3 cut(s) 93, 115, 135
AspLEI GCGC 2 cut(s) 85, 129
AxyI CCTNAGG 1 cut(s) 341
BccI CCATC 1 cut(s) 251
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 3 cut(s) 27, 30, 39
BlsI GCNGC 3 cut(s) 28, 31, 40
Bme1390I CCNGG 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse21I CCTNAGG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 137, 284
Bsh1236I CGCG 2 cut(s) 73, 127
BshFI GGCC 3 cut(s) 95, 117, 137
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 166
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 3 cut(s) 95, 117, 137
BspACI CCGC 4 cut(s) 26, 29, 38, 73
BspANI GGCC 3 cut(s) 95, 117, 137
BspFNI CGCG 2 cut(s) 73, 127
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 355, 378
BstDEI CTNAG 2 cut(s) 9, 341
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 2 cut(s) 73, 127
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 129
BstMAI GTCTC 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 35, 38
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 2 cut(s) 73, 127
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 3 cut(s) 95, 117, 137
BtsCI GGATG 1 cut(s) 262
CfoI GCGC 2 cut(s) 85, 129
CviAII CATG 2 cut(s) 299, 377
DdeI CTNAG 2 cut(s) 9, 341
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 2 cut(s) 355, 378
EarI CTCTTC 2 cut(s) 355, 378
Eco32I GATATC 1 cut(s) 157
Eco81I CCTNAGG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 2 cut(s) 302, 380
FaiI YATR 7 cut(s) 195, 197, 230, 251, 296, 300, 378
FatI CATG 2 cut(s) 298, 376
Fnu4HI GCNGC 3 cut(s) 27, 30, 39
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 3 cut(s) 27, 30, 39
FspBI CTAG 1 cut(s) 62
GlaI GCGC 2 cut(s) 84, 128
GluI GCNGC 3 cut(s) 27, 30, 39
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 3 cut(s) 95, 117, 137
HhaI GCGC 2 cut(s) 85, 129
Hin1II CATG 2 cut(s) 302, 380
Hin6I GCGC 2 cut(s) 83, 127
HinP1I GCGC 2 cut(s) 83, 127
HinfI GANTC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 298, 318, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 38
HpyF3I CTNAG 2 cut(s) 9, 341
Hsp92II CATG 2 cut(s) 302, 380
HspAI GCGC 2 cut(s) 83, 127
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 21, 151, 178, 371
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 4 cut(s) 221, 314, 365, 372
MfeI CAATTG 1 cut(s) 89
MluCI AATT 2 cut(s) 89, 319
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 6 cut(s) 140, 158, 198, 247, 262, 265
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 2 cut(s) 381, 415
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 2 cut(s) 73, 127
MwoI GCNNNNNNNGC 2 cut(s) 35, 38
NlaIII CATG 2 cut(s) 302, 380
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 300
PkrI GCNGC 3 cut(s) 28, 31, 40
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 381, 415
SatI GCNGC 3 cut(s) 27, 30, 39
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 166
SetI ASST 7 cut(s) 21, 190, 229, 276, 280, 390, 394
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 89, 319
SsiI CCGC 4 cut(s) 26, 29, 38, 73
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 358
TasI AATT 2 cut(s) 89, 319
TauI GCSGC 3 cut(s) 29, 32, 41
Tru1I TTAA 2 cut(s) 381, 415
Tru9I TTAA 2 cut(s) 381, 415
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 315, 365
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.