pycom03g02460

pre-rRNA-processing protein TSR2 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
1852214 .. 1852631
418 bp
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UTR
Exon/CDS
Intron
pycom03g02460.1

Sequence Viewer

Length: 189 bp
ATGATTATGCTTGAAGAGTGTTCATATTGTAATTTCAAGTCGATTGAAAGCCTAAGGGAAGCCAATCAACGAAGAGTTGCTCTTCCGCATGTTAGAGAGGTTGAAAATAACTTGATGATGACGAGGATAGTGACGAAGACAATGATAATAGAGATCATAGCATGGGAAATGATGACTCCTCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.37

Weight (kDa)

5.73

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AgsI TTSAA 4 cut(s) 14, 37, 47, 104
AxyI CCTNAGG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 168
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 87
BssMI GATC 1 cut(s) 153
Bst6I CTCTTC 3 cut(s) 9, 67, 87
BstDEI CTNAG 1 cut(s) 53
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 143
Bsu36I CCTNAGG 1 cut(s) 53
CviAII CATG 3 cut(s) 89, 162, 186
CviJI RGCY 2 cut(s) 51, 62
CviKI_1 RGCY 2 cut(s) 51, 62
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eam1104I CTCTTC 3 cut(s) 9, 67, 87
EarI CTCTTC 3 cut(s) 9, 67, 87
Eco81I CCTNAGG 1 cut(s) 53
FaeI CATG 3 cut(s) 92, 165, 189
FaiI YATR 6 cut(s) 8, 25, 90, 158, 163, 187
FatI CATG 3 cut(s) 88, 161, 185
FspEI CC 9 cut(s) 40, 41, 65, 76, 83, 99, 109, 148, 149
Hin1II CATG 3 cut(s) 92, 165, 189
HinfI GANTC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 3 cut(s) 92, 165, 189
Kzo9I GATC 1 cut(s) 153
LguI GCTCTTC 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 4 cut(s) 26, 74, 84, 148
MluCI AATT 1 cut(s) 31
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 3 cut(s) 91, 117, 189
NdeII GATC 1 cut(s) 153
NlaIII CATG 3 cut(s) 92, 165, 189
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 87
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 1 cut(s) 169
SetI ASST 1 cut(s) 102
SgeI CNNG 6 cut(s) 23, 49, 101, 124, 135, 174
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 86
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 31
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 12
XceI RCATGY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.