Rh2AG317200

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000787
Physical Location & Seq
Reverse (-)
41815468 .. 41817975
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG317200.1

Sequence Viewer

Length: 573 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGGCGGCTGCGGCGGCCTTCCAAGAAGGGGTCGGGTTGGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTCGCGAACGAGTGGGGTGGCCGTGACTCTCGCCTCAAGGCCGAGCAACTCGTCTCCGATATCGTCTCCTGGGTCACTGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTCTCTCAATACTGTGATAGAGGATGGTAGCATTGAGGAGTTATCTGAAAAAATAATGATTATGCATGAGGAATGTTCGGATTGCAATTTCAAGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCATGTTAAACAGGTTGTGGATGATGACGAAGACAGTGATGAGAACGATGATGATACTGATCCTAGCATGAATAAAGATGAGTCATCTAACATGATTGTGGACAAACCAGAGGCTCATGCAGTAGAGCCAAAGACCAAGCAAGCAGTTGAAGCAGAAGATGGTTGGGAGGTAGTCGGACCAAGAAGAAGTAGGGGTAAAAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

190

Amino Acids

21.23

Weight (kDa)

4.39

Isoelectric Point (pI)

64.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 90 2.2e-23 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 73, 101
AciI CCGC 5 cut(s) 26, 29, 35, 38, 73
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 2 cut(s) 93, 115
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 5 cut(s) 89, 215, 316, 326, 515
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 19, 218
AluI AGCT 2 cut(s) 19, 218
Alw26I GTCTC 2 cut(s) 154, 166
AlwI GGATC 1 cut(s) 419
AoxI GGCC 4 cut(s) 39, 93, 115, 135
ApeKI GCWGC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 542
AvaII GGWCC 1 cut(s) 542
AxyI CCTNAGG 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 343, 375
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 19
BccI CCATC 2 cut(s) 242, 518
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 154, 166
BfaI CTAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 5 cut(s) 27, 30, 33, 36, 39
BlsI GCNGC 5 cut(s) 28, 31, 34, 37, 40
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse21I CCTNAGG 1 cut(s) 332
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 253, 391
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 275, 354
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 2 cut(s) 73, 101
BshFI GGCC 4 cut(s) 41, 95, 117, 137
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 154, 166
BsmBI CGTCTC 2 cut(s) 154, 166
BsnI GGCC 4 cut(s) 41, 95, 117, 137
Bsp143I GATC 1 cut(s) 424
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 5 cut(s) 26, 29, 35, 38, 73
BspANI GGCC 4 cut(s) 41, 95, 117, 137
BspFNI CGCG 2 cut(s) 73, 101
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 238, 401
Bst6I CTCTTC 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 2 cut(s) 9, 332
BstF5I GGATG 2 cut(s) 253, 391
BstFNI CGCG 2 cut(s) 73, 101
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 2 cut(s) 154, 166
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 4 cut(s) 32, 35, 38, 515
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 2 cut(s) 73, 101
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 402
Bsu36I CCTNAGG 1 cut(s) 332
BsuRI GGCC 4 cut(s) 41, 95, 117, 137
BtsCI GGATG 2 cut(s) 253, 391
BtsIMutI CAGTG 2 cut(s) 171, 406
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 507
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 542
CviAII CATG 5 cut(s) 290, 368, 433, 457, 482
DdeI CTNAG 2 cut(s) 9, 332
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 542
Eco81I CCTNAGG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 291
Esp3I CGTCTC 2 cut(s) 154, 166
FaeI CATG 5 cut(s) 293, 371, 436, 460, 485
FaiI YATR 9 cut(s) 186, 188, 221, 287, 291, 369, 434, 458, 483
FatI CATG 5 cut(s) 289, 367, 432, 456, 481
Fnu4HI GCNGC 5 cut(s) 27, 30, 33, 36, 39
FokI GGATG 2 cut(s) 260, 398
Fsp4HI GCNGC 5 cut(s) 27, 30, 33, 36, 39
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 84
GluI GCNGC 5 cut(s) 27, 30, 33, 36, 39
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 4 cut(s) 41, 95, 117, 137
HhaI GCGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 293, 371, 436, 460, 485
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 2 cut(s) 122, 446
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 4 cut(s) 154, 271, 304, 542
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 44, 52
HpyCH4III ACNGT 2 cut(s) 238, 401
HpyCH4V TGCA 3 cut(s) 289, 309, 485
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 35, 38, 515
HpyF3I CTNAG 2 cut(s) 9, 332
Hsp92II CATG 5 cut(s) 293, 371, 436, 460, 485
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 21, 151, 178, 362, 486
Lsp1109I GCAGC 1 cut(s) 19
MaeI CTAG 1 cut(s) 429
MaeIII GTNAC 2 cut(s) 119, 169
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 5 cut(s) 212, 363, 407, 533, 561
MfeI CAATTG 1 cut(s) 89
MluCI AATT 3 cut(s) 89, 310, 568
MlyI GAGTC 2 cut(s) 116, 455
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 8 cut(s) 140, 189, 238, 253, 286, 375, 469, 526
Mph1103I ATGCAT 1 cut(s) 291
MseI TTAA 2 cut(s) 372, 571
MslI CAYNNNNRTG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 2 cut(s) 73, 101
MwoI GCNNNNNNNGC 4 cut(s) 32, 35, 38, 515
NdeII GATC 1 cut(s) 424
NlaIII CATG 5 cut(s) 293, 371, 436, 460, 485
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 119, 169
NruI TCGCGA 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 291
PkrI GCNGC 5 cut(s) 28, 31, 34, 37, 40
PleI GAGTC 2 cut(s) 116, 454
PpsI GAGTC 2 cut(s) 116, 454
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 542
RruI TCGCGA 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 2 cut(s) 372, 571
SatI GCNGC 5 cut(s) 27, 30, 33, 36, 39
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 2 cut(s) 116, 455
ScrFI CCNGG 1 cut(s) 166
SetI ASST 5 cut(s) 21, 181, 220, 381, 537
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 89, 310, 568
SsiI CCGC 5 cut(s) 26, 29, 35, 38, 73
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 238, 401
TaqI TCGA 1 cut(s) 349
TasI AATT 3 cut(s) 89, 310, 568
TauI GCSGC 4 cut(s) 29, 32, 38, 41
Tru1I TTAA 2 cut(s) 372, 571
Tru9I TTAA 2 cut(s) 372, 571
TscAI CASTG 2 cut(s) 178, 406
TseFI GTSAC 2 cut(s) 119, 169
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 2 cut(s) 119, 169
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 2 cut(s) 178, 406
VpaK11BI GGWCC 1 cut(s) 542
XspI CTAG 1 cut(s) 429
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.