Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

71134353 .. 71134675

Gene Structure 323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG491400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTCCTCTCCTGGGTCAATCACTCCACCGGTTTTCAAGCCCGGCCAGGTCTACCTCATCATCAAGGACCTCGTCACCAGCAGCGCTTCCATTCTTGAGACCTTCGTGCCGCTCAGAGTCGTCGGGTTGAAGGCCAGTGACGCCGTCGTTTTGATCGGCTGGGCTAAGGAGTTATTATCTCCTGCTCTTCATTGCTTTGGCCTCAATTCCCACTTCATACATGTGTCGATCTATTATTGGCCGTGGTCAGCCCAAGCTAACCAGGGCGGGTTAGCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

OMPdecase Pribosyltran

Protein Analysis

93

Amino Acids

10.04

Weight (kDa)

8.89

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	2 cut(s)	110, 267
AcoI	YGGCCR	2 cut(s)	43, 239
AcyI	GRCGYC	1 cut(s)	141
AfeI	AGCGCT	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	220
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	37, 130
AjnI	CCWGG	3 cut(s)	10, 45, 261
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	92
Aor51HI	AGCGCT	1 cut(s)	85
AoxI	GGCC	4 cut(s)	43, 132, 199, 239
ApeKI	GCWGC	1 cut(s)	81
AsiGI	ACCGGT	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	93
BceAI	ACGGC	2 cut(s)	128, 226
BciT130I	CCWGG	3 cut(s)	12, 47, 263
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	2 cut(s)	82, 110
BlsI	GCNGC	2 cut(s)	83, 111
Bme1390I	CCNGG	4 cut(s)	12, 42, 47, 263
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	4 cut(s)	12, 42, 47, 263
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	11, 242, 262
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	3 cut(s)	12, 47, 263
BseDI	CCNNGG	3 cut(s)	11, 242, 262
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	4 cut(s)	45, 134, 201, 241
BshTI	ACCGGT	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	29, 42
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	45, 134, 201, 241
Bso31I	GGTCTC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	153, 228
BspACI	CCGC	2 cut(s)	110, 267
BspANI	GGCC	4 cut(s)	45, 134, 201, 241
BspCNI	CTCAG	1 cut(s)	126
BspQI	GCTCTTC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	11, 242, 262
BssMI	GATC	2 cut(s)	153, 228
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	12, 47, 263
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	113, 165
BstDSI	CCRYGG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	156, 231
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	153, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	3 cut(s)	12, 47, 263
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	4 cut(s)	10, 40, 45, 261
BstV1I	GCAGC	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	45, 134, 201, 241
BtgI	CCRYGG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	149
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	9 cut(s)	40, 45, 134, 159, 164, 201, 241, 251, 257
CviKI_1	RGCY	9 cut(s)	40, 45, 134, 159, 164, 201, 241, 251, 257
DdeI	CTNAG	2 cut(s)	113, 165
DpnI	GATC	2 cut(s)	155, 230
DpnII	GATC	2 cut(s)	153, 228
EaeI	YGGCCR	2 cut(s)	43, 239
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	67
Eco47III	AGCGCT	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	10, 45, 261
FaeI	CATG	1 cut(s)	224
FaiI	YATR	2 cut(s)	218, 222
FatI	CATG	1 cut(s)	220
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	82, 110
Fsp4HI	GCNGC	2 cut(s)	82, 110
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	82, 110
GsaI	CCCAGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	4 cut(s)	45, 134, 201, 241
HapII	CCGG	2 cut(s)	29, 42
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	2 cut(s)	29, 42
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	2 cut(s)	125, 149
HpyAV	CCTTC	2 cut(s)	112, 124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	113, 165
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	153, 228
LguI	GCTCTTC	1 cut(s)	192
Lsp1109I	GCAGC	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	73, 137
MalI	GATC	2 cut(s)	155, 230
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	2 cut(s)	153, 228
MboII	GAAGA	1 cut(s)	179
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	16, 65, 80, 212
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	2 cut(s)	29, 42
MspR9I	CCNGG	4 cut(s)	12, 42, 47, 263
MvaI	CCWGG	3 cut(s)	12, 47, 263
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	2 cut(s)	153, 228
NlaIII	CATG	1 cut(s)	224
NmuCI	GTSAC	2 cut(s)	73, 137
NspI	RCATGY	1 cut(s)	224
PciI	ACATGT	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	192
PflFI	GACNNNGTC	2 cut(s)	71, 143
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	83, 111
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	67
PscI	ACATGT	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	10, 45, 261
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	3 cut(s)	10, 45, 261
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PsyI	GACNNNGTC	2 cut(s)	71, 143
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	192
SatI	GCNGC	2 cut(s)	82, 110
Sau3AI	GATC	2 cut(s)	153, 228
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	4 cut(s)	12, 42, 47, 263
SetI	ASST	5 cut(s)	51, 57, 72, 104, 259
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	2 cut(s)	110, 267
StyD4I	CCNGG	4 cut(s)	10, 40, 45, 261
TaqI	TCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	205
TauI	GCSGC	1 cut(s)	112
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	73, 137
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	2 cut(s)	73, 137
TspDTI	ATGAA	2 cut(s)	179, 205
TspRI	CASTG	1 cut(s)	142
Tth111I	GACNNNGTC	2 cut(s)	71, 143
VpaK11BI	GGWCC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.