Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000157.1

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Reverse (-)

209902 .. 212673

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000157.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgtcacgtatgtggacccaagccacaaatatgatcttggggcttgcagaagtggcaatctttgtcgacgacgacaacgaccttctccctctcccaaagcttcatctctcaagtaagctttcttttcctgattttaaggcacaaattgtgtctaggcacgaacgacgtcgtctccacctttgtatatccaccactgttgctttcctcattctctccatcgccgtgttcttcatcttcccctccgatcttgcactagagctcacccggatccaacttaatgacgttggagtccactcatcaccaaagctcaccctggacctctcgttctcgctgacaatcaagtttcagaaccgcgacttcttctcgctttaccatgacttgctagtggtcaaatccaggtggtcatatgtgaacgccacgctcatgctagatggattggaggatttcaagcccggccaggtctacctcatcatcaaggacctcgtcaccagcagcgcttccattctcgagaccttcgtgacgctcagagtcgtcgggttgaaggccagtgacgccgtcgttttgatcggccgggctaaggagttattatctcctgctcttcattgctttggcctcaattcccacttcatacacgtgtcgatctattattggccgtggtcagcccaagctaaccagggctggttagcgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

230

Amino Acids

26.01

Weight (kDa)

7.84

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AatII	GACGTC	1 cut(s)	169
AccI	GTMKAC	2 cut(s)	66, 462
AccII	CGCG	1 cut(s)	354
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	2 cut(s)	262, 275
AcoI	YGGCCR	3 cut(s)	454, 568, 650
AcvI	CACGTG	1 cut(s)	634
AcyI	GRCGYC	2 cut(s)	166, 552
AfeI	AGCGCT	1 cut(s)	496
AfiI	CCNNNNNNNGG	1 cut(s)	577
AflIII	ACRYGT	2 cut(s)	631, 633
AgsI	TTSAA	2 cut(s)	448, 541
AjnI	CCWGG	4 cut(s)	312, 395, 456, 672
AleI	CACNNNNGTG	1 cut(s)	10
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	5 cut(s)	100, 118, 259, 307, 668
AluI	AGCT	5 cut(s)	100, 118, 259, 307, 668
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	176, 503
AlwI	GGATC	2 cut(s)	262, 275
Ama87I	CYCGRG	1 cut(s)	506
Aor51HI	AGCGCT	1 cut(s)	496
AoxI	GGCC	5 cut(s)	454, 543, 568, 610, 650
ApeKI	GCWGC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	3 cut(s)	15, 316, 478
AsuC2I	CCSGG	3 cut(s)	265, 453, 572
AsuHPI	GGTGA	4 cut(s)	253, 291, 301, 478
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	3 cut(s)	15, 316, 478
BamHI	GGATCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	261
BbrPI	CACGTG	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	2 cut(s)	224, 425
BceAI	ACGGC	3 cut(s)	206, 539, 637
BciT130I	CCWGG	4 cut(s)	314, 397, 458, 674
BcnI	CCSGG	3 cut(s)	265, 453, 572
BcoDI	GTCTC	2 cut(s)	176, 503
BfaI	CTAG	4 cut(s)	153, 254, 383, 428
BfoI	RGCGCY	1 cut(s)	498
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
Bme1390I	CCNGG	7 cut(s)	265, 314, 397, 453, 458, 572, 674
Bme18I	GGWCC	3 cut(s)	15, 316, 478
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	3 cut(s)	15, 316, 478
BmiI	GGNNCC	2 cut(s)	17, 269
BmrFI	CCNGG	7 cut(s)	265, 314, 397, 453, 458, 572, 674
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	3 cut(s)	265, 453, 572
BsaAI	YACGTR	2 cut(s)	8, 634
BsaHI	GRCGYC	2 cut(s)	166, 552
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	312, 653, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	601
BseBI	CCWGG	4 cut(s)	314, 397, 458, 674
BseDI	CCNNGG	3 cut(s)	312, 653, 673
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	538
BseNI	ACTGG	1 cut(s)	546
BseX3I	CGGCCG	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	504
Bsh1236I	CGCG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	571
BshFI	GGCC	5 cut(s)	456, 545, 570, 612, 652
BsiEI	CGRYCG	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	3 cut(s)	265, 453, 571
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	2 cut(s)	176, 503
BsmBI	CGTCTC	1 cut(s)	176
BsnI	GGCC	5 cut(s)	456, 545, 570, 612, 652
Bso31I	GGTCTC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	33, 244, 267, 564, 639
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	5 cut(s)	456, 545, 570, 612, 652
BspCNI	CTCAG	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	17, 269
BspPI	GGATC	2 cut(s)	262, 275
BspQI	GCTCTTC	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	312, 653, 673
BssMI	GATC	5 cut(s)	33, 244, 267, 564, 639
BssNI	GRCGYC	2 cut(s)	166, 552
Bst2UI	CCWGG	4 cut(s)	314, 397, 458, 674
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	2 cut(s)	166, 552
BstBAI	YACGTR	2 cut(s)	8, 634
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	524, 576
BstDSI	CCRYGG	1 cut(s)	653
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	5 cut(s)	36, 247, 270, 567, 642
BstMAI	GTCTC	2 cut(s)	176, 503
BstMBI	GATC	5 cut(s)	33, 244, 267, 564, 639
BstMCI	CGRYCG	1 cut(s)	571
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 551
BstNI	CCWGG	4 cut(s)	314, 397, 458, 674
BstSCI	CCNGG	7 cut(s)	263, 312, 395, 451, 456, 570, 672
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZI	CGGCCG	1 cut(s)	568
BsuRI	GGCC	5 cut(s)	456, 545, 570, 612, 652
BtgI	CCRYGG	1 cut(s)	653
BtgZI	GCGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	192, 553
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	3 cut(s)	15, 316, 478
CseI	GACGC	2 cut(s)	529, 560
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	2 cut(s)	374, 424
DdeI	CTNAG	2 cut(s)	524, 576
DpnI	GATC	5 cut(s)	35, 246, 269, 566, 641
DpnII	GATC	5 cut(s)	33, 244, 267, 564, 639
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	3 cut(s)	454, 568, 650
EagI	CGGCCG	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	3 cut(s)	15, 316, 478
Eco47III	AGCGCT	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	259
Eco72I	CACGTG	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRII	CCWGG	4 cut(s)	312, 395, 456, 672
EcoT38I	GRGCYC	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	377, 427
FaiI	YATR	8 cut(s)	11, 32, 185, 375, 406, 408, 425, 629
FatI	CATG	2 cut(s)	373, 423
FauNDI	CATATG	1 cut(s)	406
FblI	GTMKAC	2 cut(s)	66, 462
Fnu4HI	GCNGC	1 cut(s)	493
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	4 cut(s)	153, 254, 383, 428
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	1 cut(s)	493
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	5 cut(s)	456, 545, 570, 612, 652
HapII	CCGG	3 cut(s)	265, 453, 571
HgaI	GACGC	2 cut(s)	529, 560
HhaI	GCGC	1 cut(s)	497
Hin1I	GRCGYC	2 cut(s)	166, 552
Hin1II	CATG	2 cut(s)	377, 427
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	2 cut(s)	98, 116
HinfI	GANTC	2 cut(s)	288, 528
HpaII	CCGG	3 cut(s)	265, 453, 571
HphI	GGTGA	4 cut(s)	253, 291, 301, 478
Hpy166II	GTNNAC	5 cut(s)	15, 67, 292, 412, 463
Hpy188I	TCNGA	3 cut(s)	244, 348, 527
Hpy188III	TCNNGA	4 cut(s)	128, 506, 508, 517
Hpy8I	GTNNAC	5 cut(s)	15, 67, 292, 412, 463
Hpy99I	CGWCG	6 cut(s)	71, 74, 168, 171, 536, 560
HpyAV	CCTTC	3 cut(s)	92, 523, 535
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	4 cut(s)	7, 166, 282, 633
HpyCH4V	TGCA	2 cut(s)	47, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 551
HpyF3I	CTNAG	2 cut(s)	524, 576
HpySE526I	ACGT	4 cut(s)	7, 166, 282, 633
Hsp92I	GRCGYC	2 cut(s)	166, 552
Hsp92II	CATG	2 cut(s)	377, 427
HspAI	GCGC	1 cut(s)	495
Kzo9I	GATC	5 cut(s)	33, 244, 267, 564, 639
LguI	GCTCTTC	1 cut(s)	603
Lsp1109I	GCAGC	1 cut(s)	504
MaeI	CTAG	4 cut(s)	153, 254, 383, 428
MaeII	ACGT	4 cut(s)	7, 166, 282, 633
MaeIII	GTNAC	4 cut(s)	3, 484, 517, 548
MalI	GATC	5 cut(s)	35, 246, 269, 566, 641
MboI	GATC	5 cut(s)	33, 244, 267, 564, 639
MboII	GAAGA	4 cut(s)	220, 226, 352, 590
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	2 cut(s)	144, 616
MlyI	GAGTC	2 cut(s)	297, 537
MmeI	TCCRAC	2 cut(s)	265, 295
MnlI	CCTC	8 cut(s)	99, 215, 250, 329, 433, 476, 491, 623
MseI	TTAA	2 cut(s)	135, 276
MslI	CAYNNNNRTG	5 cut(s)	10, 29, 221, 422, 632
MspI	CCGG	3 cut(s)	265, 453, 571
MspR9I	CCNGG	7 cut(s)	265, 314, 397, 453, 458, 572, 674
MvaI	CCWGG	4 cut(s)	314, 397, 458, 674
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	53, 551
NciI	CCSGG	3 cut(s)	265, 453, 572
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	5 cut(s)	33, 244, 267, 564, 639
NlaIII	CATG	2 cut(s)	377, 427
NlaIV	GGNNCC	2 cut(s)	17, 269
NmuCI	GTSAC	4 cut(s)	3, 484, 517, 548
OliI	CACNNNNGTG	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 513
PflFI	GACNNNGTC	3 cut(s)	168, 482, 554
PkrI	GCNGC	1 cut(s)	494
PleI	GAGTC	2 cut(s)	296, 536
PmaCI	CACGTG	1 cut(s)	634
PmlI	CACGTG	1 cut(s)	634
PpsI	GAGTC	2 cut(s)	296, 536
Ppu21I	YACGTR	2 cut(s)	8, 634
PpuMI	RGGWCCY	1 cut(s)	478
Psp124BI	GAGCTC	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	478
Psp6I	CCWGG	4 cut(s)	312, 395, 456, 672
PspCI	CACGTG	1 cut(s)	634
PspGI	CCWGG	4 cut(s)	312, 395, 456, 672
PspN4I	GGNNCC	2 cut(s)	17, 269
PspPI	GGNCC	3 cut(s)	15, 316, 478
PspPPI	RGGWCCY	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	267
PsyI	GACNNNGTC	3 cut(s)	168, 482, 554
RseI	CAYNNNNRTG	5 cut(s)	10, 29, 221, 422, 632
SacI	GAGCTC	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	135, 276
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	5 cut(s)	33, 244, 267, 564, 639
Sau96I	GGNCC	3 cut(s)	15, 316, 478
SchI	GAGTC	2 cut(s)	297, 537
ScrFI	CCNGG	7 cut(s)	265, 314, 397, 453, 458, 572, 674
SduI	GDGCHC	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	506
SinI	GGWCC	3 cut(s)	15, 316, 478
SlaI	CTCGAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	5 cut(s)	10, 29, 221, 422, 632
SmlI	CTYRAG	2 cut(s)	109, 506
SmoI	CTYRAG	2 cut(s)	109, 506
Sse9I	AATT	2 cut(s)	144, 616
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	4 cut(s)	153, 254, 383, 428
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	7 cut(s)	263, 312, 395, 451, 456, 570, 672
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	4 cut(s)	10, 169, 285, 636
TaqI	TCGA	3 cut(s)	66, 507, 638
TasI	AATT	2 cut(s)	144, 616
Tru1I	TTAA	2 cut(s)	135, 276
Tru9I	TTAA	2 cut(s)	135, 276
TscAI	CASTG	2 cut(s)	199, 553
TseFI	GTSAC	4 cut(s)	3, 484, 517, 548
TseI	GCWGC	1 cut(s)	492
Tsp45I	GTSAC	4 cut(s)	3, 484, 517, 548
TspDTI	ATGAA	4 cut(s)	92, 220, 590, 616
TspRI	CASTG	2 cut(s)	199, 553
Tth111I	GACNNNGTC	3 cut(s)	168, 482, 554
VpaK11BI	GGWCC	3 cut(s)	15, 316, 478
XhoI	CTCGAG	1 cut(s)	506
XmiI	GTMKAC	2 cut(s)	66, 462
XspI	CTAG	4 cut(s)	153, 254, 383, 428
ZraI	GACGTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.