Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Reverse (-)

35665107 .. 35666135

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42701.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAAATGCAAACTCTTTAATTTTACTGTTTTCCCTCTTTTCCGTAGTTGTAGTCTATTAAAGAACAAGGTGAGCTGGTCGGCGCTTCAATTGGCCGTCGAGTTACAGTGTGGCGGCCGTGACTCGCGCCAAAAAGCTGAGCAACTCTTTCTCCGATATCGTGTCCTGGGTCAATCACTCCACCGGTTGCTAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

67

Amino Acids

7.73

Weight (kDa)

10.46

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WGG	PF10273	25 - 49	3e-06	Pre-rRNA-processing protein TSR2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	127
AciI	CCGC	1 cut(s)	114
AcoI	YGGCCR	2 cut(s)	93, 115
AgeI	ACCGGT	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	75, 137
AluI	AGCT	2 cut(s)	75, 137
AoxI	GGCC	2 cut(s)	93, 115
AsiGI	ACCGGT	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	85, 129
AsuHPI	GGTGA	1 cut(s)	82
BceAI	ACGGC	2 cut(s)	80, 102
BciT130I	CCWGG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse118I	RCCGGY	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	95, 117
BshTI	ACCGGT	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	184
BsnI	GGCC	2 cut(s)	95, 117
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	95, 117
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	28, 108
BstDEI	CTNAG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 129
BstMCI	CGRYCG	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	95, 117
BtsIMutI	CAGTG	1 cut(s)	113
CfoI	GCGC	2 cut(s)	85, 129
Cfr10I	RCCGGY	1 cut(s)	183
CspAI	ACCGGT	1 cut(s)	183
CviJI	RGCY	4 cut(s)	75, 95, 117, 137
CviKI_1	RGCY	4 cut(s)	75, 95, 117, 137
DdeI	CTNAG	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	93, 115
EagI	CGGCCG	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	158
Eco52I	CGGCCG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	115
GlaI	GCGC	2 cut(s)	84, 128
GluI	GCNGC	1 cut(s)	115
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	95, 117
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	2 cut(s)	85, 129
Hin6I	GCGC	2 cut(s)	83, 127
HinP1I	GCGC	2 cut(s)	83, 127
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	155
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	28, 108
HpyCH4V	TGCA	1 cut(s)	9
HpyF3I	CTNAG	1 cut(s)	138
HspAI	GCGC	2 cut(s)	83, 127
LpnPI	CCDG	4 cut(s)	61, 152, 179, 197
MaeIII	GTNAC	2 cut(s)	102, 119
MfeI	CAATTG	1 cut(s)	89
MluCI	AATT	2 cut(s)	19, 89
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	1 cut(s)	45
MseI	TTAA	2 cut(s)	18, 59
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	119
PinAI	ACCGGT	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	18, 59
SatI	GCNGC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	3 cut(s)	72, 77, 139
Sse9I	AATT	2 cut(s)	19, 89
SsiI	CCGC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	28, 108
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	19, 89
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	18, 59
Tru9I	TTAA	2 cut(s)	18, 59
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.