RchiOBHm_Chr1g0334081

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000787
Physical Location & Seq
Reverse (-)
26176808 .. 26180443
3636 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56284

Sequence Viewer

Length: 582 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGCCGGCTGCGGCGGCCTTCCAAGAAGGGGTCGGGTTGGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTCGAGAACGAGTGGGGTGGCCGTGAATCGCGCCTCAAGGCCGAGCAACTGGTCTCTGATATCTTCTCCTGGGTCAATTTCTCCACCGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTCTCTCAATACTGTGATAGAGGATGGTAGCATTGAAGAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAGGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCATGTTAAACAGGTTGTCAATGATGAAGAAGACAGTGACGAGGATGATGATGATACTGATCCCAGCATGAATAAAGATGATTCATCAAACATGATTGTGGACAAACCAGAGTCTCATGCAGTAGAGCCAAAGACCAAGCAGGCAGTTGAAGCGGAAGATGGTTGGGAGGTAGTCGGACCAAGAAGAAGTAGGGGTAAAAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

193

Amino Acids

21.76

Weight (kDa)

4.38

Isoelectric Point (pI)

73.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 94 4.8e-25 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccII CGCG 2 cut(s) 73, 127
AciI CCGC 4 cut(s) 35, 38, 73, 527
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 2 cut(s) 93, 115
AcyI GRCGYC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 5 cut(s) 89, 224, 269, 335, 524
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 3 cut(s) 19, 227, 278
AluI AGCT 3 cut(s) 19, 227, 278
Alw26I GTCTC 2 cut(s) 154, 492
AlwI GGATC 1 cut(s) 428
AoxI GGCC 4 cut(s) 39, 93, 115, 135
ApeKI GCWGC 1 cut(s) 32
AspLEI GCGC 3 cut(s) 28, 85, 129
AspS9I GGNCC 1 cut(s) 551
AvaII GGWCC 1 cut(s) 551
AxyI CCTNAGG 1 cut(s) 341
BanI GGYRCC 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
BbsI GAAGAC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 19
BccI CCATC 2 cut(s) 251, 527
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 154, 492
BfoI RGCGCY 2 cut(s) 29, 86
BisI GCNGC 3 cut(s) 33, 36, 39
BlsI GCNGC 3 cut(s) 34, 37, 40
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 2 cut(s) 6, 27
BmrFI CCNGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 150
Bse21I CCTNAGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 262, 424
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 437
Bsh1236I CGCG 2 cut(s) 73, 127
BshFI GGCC 4 cut(s) 41, 95, 117, 137
BshNI GGYRCC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 154, 492
BsnI GGCC 4 cut(s) 41, 95, 117, 137
Bso31I GGTCTC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 4 cut(s) 35, 38, 73, 527
BspANI GGCC 4 cut(s) 41, 95, 117, 137
BspFNI CGCG 2 cut(s) 73, 127
BspLI GGNNCC 2 cut(s) 6, 27
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 433
BssNI GRCGYC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 247, 410
Bst6I CTCTTC 2 cut(s) 264, 355
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 30, 516
BstDEI CTNAG 2 cut(s) 9, 341
BstF5I GGATG 2 cut(s) 262, 424
BstFNI CGCG 2 cut(s) 73, 127
BstH2I RGCGCY 2 cut(s) 29, 86
BstHHI GCGC 3 cut(s) 28, 85, 129
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 2 cut(s) 154, 492
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 4 cut(s) 25, 32, 38, 524
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 2 cut(s) 73, 127
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 4 cut(s) 41, 95, 117, 137
BtsCI GGATG 2 cut(s) 262, 424
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 2 cut(s) 30, 516
CfoI GCGC 3 cut(s) 28, 85, 129
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 551
CviAII CATG 5 cut(s) 299, 377, 442, 466, 491
DdeI CTNAG 2 cut(s) 9, 341
DinI GGCGCC 1 cut(s) 27
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 2 cut(s) 264, 355
EarI CTCTTC 2 cut(s) 264, 355
Eco31I GGTCTC 1 cut(s) 154
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 551
Eco81I CCTNAGG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 300
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
FaeI CATG 5 cut(s) 302, 380, 445, 469, 494
FaiI YATR 9 cut(s) 195, 197, 230, 296, 300, 378, 443, 467, 492
FatI CATG 5 cut(s) 298, 376, 441, 465, 490
Fnu4HI GCNGC 3 cut(s) 33, 36, 39
FokI GGATG 2 cut(s) 269, 431
Fsp4HI GCNGC 3 cut(s) 33, 36, 39
GlaI GCGC 3 cut(s) 27, 84, 128
GluI GCNGC 3 cut(s) 33, 36, 39
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 2 cut(s) 29, 86
HaeIII GGCC 4 cut(s) 41, 95, 117, 137
HapII CCGG 1 cut(s) 29
HhaI GCGC 3 cut(s) 28, 85, 129
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 5 cut(s) 302, 380, 445, 469, 494
Hin6I GCGC 3 cut(s) 26, 83, 127
HinP1I GCGC 3 cut(s) 26, 83, 127
HinfI GANTC 3 cut(s) 122, 455, 485
HpaII CCGG 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 2 cut(s) 154, 551
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 44, 52
HpyCH4III ACNGT 2 cut(s) 247, 410
HpyCH4V TGCA 3 cut(s) 298, 318, 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 32, 38, 524
HpyF3I CTNAG 2 cut(s) 9, 341
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 5 cut(s) 302, 380, 445, 469, 494
HspAI GCGC 3 cut(s) 26, 83, 127
KasI GGCGCC 1 cut(s) 25
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 9 cut(s) 151, 221, 281, 314, 372, 413, 416, 542, 570
MfeI CAATTG 1 cut(s) 89
MluCI AATT 4 cut(s) 89, 172, 319, 577
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 7 cut(s) 140, 198, 247, 265, 384, 409, 535
Mph1103I ATGCAT 1 cut(s) 300
MroNI GCCGGC 1 cut(s) 28
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 470
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 2 cut(s) 73, 127
MwoI GCNNNNNNNGC 4 cut(s) 25, 32, 38, 524
NaeI GCCGGC 1 cut(s) 30
NarI GGCGCC 1 cut(s) 26
NdeII GATC 1 cut(s) 433
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 5 cut(s) 302, 380, 445, 469, 494
NlaIV GGNNCC 2 cut(s) 6, 27
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 122, 455
PkrI GCNGC 3 cut(s) 34, 37, 40
PleI GAGTC 1 cut(s) 493
PluTI GGCGCC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 6, 27
PspPI GGNCC 1 cut(s) 551
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 33, 36, 39
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 166
SetI ASST 8 cut(s) 21, 190, 229, 276, 280, 329, 390, 546
SfoI GGCGCC 1 cut(s) 27
SinI GGWCC 1 cut(s) 551
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 4 cut(s) 89, 172, 319, 577
SsiI CCGC 4 cut(s) 35, 38, 73, 527
SspDI GGCGCC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 247, 410
TaqI TCGA 2 cut(s) 99, 358
TasI AATT 4 cut(s) 89, 172, 319, 577
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 2 cut(s) 122, 455
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 315, 414, 447, 458
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 551
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.