RLG00000036619

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000787
Physical Location & Seq
Reverse (-)
82584632 .. 82587100
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036619

Sequence Viewer

Length: 690 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGGCGGCTGCGGTGGCGTTCCAAGAAGGGGTCGGGTTAGTTCTGTCGCGGTGGTCGGCACTTCAATTGGCCGTCGAGAACGAGTGGGGTGGCCGTGACTCGCACCTCAAGGCCGAGCAACTCGTCTCCGATATCGTCTCCTGGGTCAATTTCTCTACCGATAGTAGGAACTATGTACACACTAAACATCTGAAGTCCCAGATATACTACATCGATACTCTGTATTTTGCCTTTACTGCAAAGCGAGCAGGTAATTTTGGTCAGTCTGCACCTATGCTGCGTTTAGATTTGTTGAGAACTGGCTGTTTTATCTTTATTGTGTTCTTAGATTTTAATTGGCTTCGGATTTTTGCACAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAAGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCATGTTAAACAGGTTGTGGATGATGACGAAGACAGTGATGAGAACGATGATGATACTGATCCTCGCATGAATAAAGATGAGTCATCAAACATGATTGTGGACAAACCAGAGGCTCATGCAGTAGAGCCAAAGACCAATCAGGCAGTTGAAGCAGAAGAGGGTTGGGAGGTAGTCGGACCAAGAAGAAGTAGGGGTAAAAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

230

Amino Acids

26.17

Weight (kDa)

5.14

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 69 8.3e-15 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AccII CGCG 1 cut(s) 73
AciI CCGC 4 cut(s) 26, 29, 35, 73
AclWI GGATC 1 cut(s) 536
AcoI YGGCCR 2 cut(s) 93, 115
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 52, 189
AgsI TTSAA 4 cut(s) 89, 433, 443, 632
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 19, 386
AluI AGCT 2 cut(s) 19, 386
Alw26I GTCTC 2 cut(s) 154, 166
AlwI GGATC 1 cut(s) 536
AoxI GGCC 3 cut(s) 93, 115, 135
ApeKI GCWGC 2 cut(s) 32, 301
AspS9I GGNCC 1 cut(s) 659
AvaII GGWCC 1 cut(s) 659
AxyI CCTNAGG 1 cut(s) 449
BarI GAAGNNNNNNTAC 2 cut(s) 460, 492
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 2 cut(s) 19, 288
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 154, 166
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 4 cut(s) 27, 30, 33, 302
BlsI GCNGC 4 cut(s) 28, 31, 34, 303
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 116
Bsa29I ATCGAT 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 189
Bse1I ACTGG 1 cut(s) 328
Bse21I CCTNAGG 1 cut(s) 449
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 508
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 52, 189
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 2 cut(s) 19, 288
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 3 cut(s) 95, 117, 137
BshVI ATCGAT 1 cut(s) 237
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 2 cut(s) 52, 189
BsmAI GTCTC 2 cut(s) 154, 166
BsmBI CGTCTC 2 cut(s) 154, 166
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 3 cut(s) 95, 117, 137
Bsp1407I TGTACA 1 cut(s) 199
Bsp143I GATC 1 cut(s) 541
BspACI CCGC 4 cut(s) 26, 29, 35, 73
BspANI GGCC 3 cut(s) 95, 117, 137
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 1 cut(s) 536
BsrGI TGTACA 1 cut(s) 199
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 541
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 2 cut(s) 463, 633
BstAUI TGTACA 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 3 cut(s) 9, 349, 449
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 1 cut(s) 544
BstMAI GTCTC 2 cut(s) 154, 166
BstMBI GATC 1 cut(s) 541
BstMWI GCNNNNNNNGC 6 cut(s) 32, 38, 260, 269, 383, 632
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 19, 288
BstV2I GAAGAC 1 cut(s) 519
Bsu15I ATCGAT 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 449
BsuRI GGCC 3 cut(s) 95, 117, 137
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 1 cut(s) 508
BtsIMutI CAGTG 1 cut(s) 523
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 659
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 1 cut(s) 200
CviAII CATG 5 cut(s) 407, 485, 550, 574, 599
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 3 cut(s) 9, 349, 449
DpnI GATC 1 cut(s) 543
DpnII GATC 1 cut(s) 541
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 2 cut(s) 463, 633
EarI CTCTTC 2 cut(s) 463, 633
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 236
Eco81I CCTNAGG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 408
Esp3I CGTCTC 2 cut(s) 154, 166
FaeI CATG 5 cut(s) 410, 488, 553, 577, 602
FaiI YATR 9 cut(s) 198, 229, 299, 404, 408, 486, 551, 575, 600
FaqI GGGAC 1 cut(s) 205
FatI CATG 5 cut(s) 406, 484, 549, 573, 598
Fnu4HI GCNGC 4 cut(s) 27, 30, 33, 302
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 4 cut(s) 27, 30, 33, 302
GluI GCNGC 4 cut(s) 27, 30, 33, 302
HaeIII GGCC 3 cut(s) 95, 117, 137
Hin1II CATG 5 cut(s) 410, 488, 553, 577, 602
HinfI GANTC 2 cut(s) 122, 563
Hpy166II GTNNAC 2 cut(s) 202, 583
Hpy188I TCNGA 4 cut(s) 154, 216, 369, 659
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 2 cut(s) 202, 583
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4V TGCA 6 cut(s) 263, 293, 377, 406, 426, 602
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 38, 260, 269, 383, 632
HpyF3I CTNAG 3 cut(s) 9, 349, 449
Hsp92II CATG 5 cut(s) 410, 488, 553, 577, 602
Kzo9I GATC 1 cut(s) 541
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 19, 288
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 543
MboI GATC 1 cut(s) 541
MboII GAAGA 5 cut(s) 422, 480, 524, 650, 678
MfeI CAATTG 1 cut(s) 89
MluCI AATT 6 cut(s) 89, 172, 277, 358, 427, 685
MlyI GAGTC 2 cut(s) 116, 572
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 6 cut(s) 140, 492, 555, 586, 634, 643
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 3 cut(s) 357, 489, 688
MslI CAYNNNNRTG 1 cut(s) 578
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 6 cut(s) 32, 38, 260, 269, 383, 632
NdeII GATC 1 cut(s) 541
NlaIII CATG 5 cut(s) 410, 488, 553, 577, 602
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 408
PkrI GCNGC 4 cut(s) 28, 31, 34, 303
PleI GAGTC 2 cut(s) 116, 571
PpsI GAGTC 2 cut(s) 116, 571
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 659
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 3 cut(s) 357, 489, 688
SatI GCNGC 4 cut(s) 27, 30, 33, 302
Sau3AI GATC 1 cut(s) 541
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 2 cut(s) 116, 572
ScrFI CCNGG 1 cut(s) 166
SetI ASST 8 cut(s) 21, 132, 277, 298, 384, 388, 498, 654
SinI GGWCC 1 cut(s) 659
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 6 cut(s) 89, 172, 277, 358, 427, 685
SsiI CCGC 4 cut(s) 26, 29, 35, 73
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 518
TaqI TCGA 3 cut(s) 99, 237, 466
TasI AATT 6 cut(s) 89, 172, 277, 358, 427, 685
TatI WGTACW 1 cut(s) 199
TauI GCSGC 2 cut(s) 29, 32
Tru1I TTAA 3 cut(s) 357, 489, 688
Tru9I TTAA 3 cut(s) 357, 489, 688
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 32, 301
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 423, 566
TspRI CASTG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 659
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.