Rh1CG128200

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000787
Physical Location & Seq
Reverse (-)
28251030 .. 28261000
9971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG128200.1

Sequence Viewer

Length: 1050 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGCCGGCTGCGGCGGCCTTCCAAGAAGGGGTCGGGTTGGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTCGAGAACCAGTGGGGTGGCCGTGAATCGCGCCTCAAGGCCGAGCAACTGGTCTCTGATATCGTCTCCTGGGTCAATTTCTCCACCGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTCTCTCAATACTGTGATAGAGGATGGTAGCATTGAAGAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAGGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCATGTTAAACAGGTTGTCAATGATGAAGAAGACAGTGACGAGGATGATGATGATACTGATCCCAGCATGAATAAAGATGATTCATCAAACATGATTGTGGACAAACCAGAGTCTCATGCAGTAGAGCCAAAGACCAAGCAGGCAGTTGAAGCGGAAGATGGTTGGGAGTCTCGGAATGACAGACGCCAGTACCGATTAATCAAGCTCGAGAATGGCCTCACTGCATTGCTAGTTCACGATCCTGAGATTGGAGAATCCCAACTCTCTGAGGGCTCTGAGGAAGACGACGATAGTGAAGGAGAGGATGAAGATGAACTGAATAAGAAAAAGGGAGGGGATTCTCGGACTAACAAGGCAGCAGCAGCAATGTGTGTAGGAATAGGCAGCTTCTCTGACCCTCCTGAGGCACAGGGGCTTGCACACTTTCTAGAACACATGCTTTTCATGGGGAGTACAGAATTTCCAGATGAAAATGAGTTAGTTACTTATCCAAGCACGGAGGGGTGCCTTGACGAGCTCTTTGTTTCACCCCTTGTAAAAAATGAAGCCATGGAGCGGGAGGTACAGGCTGTAGATTCAGAGTTTAACCAGGCTCTGCAGAACGGTGCTTGCCGCCTTGAACAACTTCAATGCCATACAGCCTCACCTGGTCACCCGTTTAATAGATTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

349

Amino Acids

38.91

Weight (kDa)

4.29

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 94 7.2e-25 Pre-rRNA-processing protein TSR2
Peptidase_M16 PF00675 240 - 292 1.8e-12 Insulinase (Peptidase family M16)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 25, 879
AccBSI CCGCTC 1 cut(s) 931
AccII CGCG 2 cut(s) 73, 127
AciI CCGC 6 cut(s) 35, 38, 73, 527, 931, 988
AclWI GGATC 2 cut(s) 428, 608
AcoI YGGCCR 2 cut(s) 93, 115
AcsI RAATTY 1 cut(s) 833
AcyI GRCGYC 2 cut(s) 26, 559
AfaI GTAC 3 cut(s) 566, 829, 939
AfiI CCNNNNNNNGG 4 cut(s) 52, 623, 778, 930
AgsI TTSAA 7 cut(s) 89, 224, 269, 335, 524, 995, 1004
AjnI CCWGG 3 cut(s) 164, 963, 1021
AluBI AGCT 6 cut(s) 19, 227, 278, 580, 762, 892
AluI AGCT 6 cut(s) 19, 227, 278, 580, 762, 892
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 4 cut(s) 154, 166, 492, 549
AlwI GGATC 2 cut(s) 428, 608
AlwNI CAGNNNCTG 1 cut(s) 970
Ama87I CYCGRG 1 cut(s) 581
AoxI GGCC 5 cut(s) 39, 93, 115, 135, 589
ApeKI GCWGC 5 cut(s) 32, 731, 734, 737, 759
ApoI RAATTY 1 cut(s) 833
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
AseI ATTAAT 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 999
AspLEI GCGC 3 cut(s) 28, 85, 129
AsuHPI GGTGA 3 cut(s) 894, 1011, 1019
AvaI CYCGRG 1 cut(s) 581
AxyI CCTNAGG 2 cut(s) 341, 777
BaeI ACNNNNGTAYC 2 cut(s) 548, 581
BanI GGYRCC 2 cut(s) 25, 879
BanII GRGCYC 2 cut(s) 650, 894
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
BbsI GAAGAC 2 cut(s) 411, 663
Bbv12I GWGCWC 1 cut(s) 894
BbvI GCAGC 5 cut(s) 19, 743, 746, 749, 771
BccI CCATC 2 cut(s) 251, 527
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 3 cut(s) 166, 965, 1023
BcoDI GTCTC 4 cut(s) 154, 166, 492, 549
BfaI CTAG 2 cut(s) 605, 803
BfmI CTRYAG 2 cut(s) 945, 971
BfoI RGCGCY 2 cut(s) 29, 86
BisI GCNGC 8 cut(s) 33, 36, 39, 732, 735, 738, 760, 988
BlsI GCNGC 8 cut(s) 34, 37, 40, 733, 736, 739, 761, 989
Bme1390I CCNGG 3 cut(s) 166, 965, 1023
BmeT110I CYCGRG 1 cut(s) 581
BmiI GGNNCC 3 cut(s) 6, 27, 881
BmrFI CCNGG 3 cut(s) 166, 965, 1023
BpiI GAAGAC 2 cut(s) 411, 663
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 2 cut(s) 26, 559
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 165, 924
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 623, 778, 930
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 106, 150, 562
Bse21I CCTNAGG 2 cut(s) 341, 777
Bse3DI GCAATG 2 cut(s) 599, 747
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 3 cut(s) 166, 965, 1023
BseDI CCNNGG 2 cut(s) 165, 924
BseGI GGATG 3 cut(s) 262, 424, 685
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 4 cut(s) 52, 623, 778, 930
BseMI GCAATG 2 cut(s) 599, 747
BseMII CTCAG 4 cut(s) 609, 633, 642, 768
BseNI ACTGG 3 cut(s) 106, 150, 562
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 5 cut(s) 19, 743, 746, 749, 771
BseYI CCCAGC 1 cut(s) 437
Bsh1236I CGCG 2 cut(s) 73, 127
BshFI GGCC 5 cut(s) 41, 95, 117, 137, 591
BshNI GGYRCC 2 cut(s) 25, 879
BsiHKAI GWGCWC 1 cut(s) 894
BsiHKCI CYCGRG 1 cut(s) 581
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 4 cut(s) 52, 623, 778, 930
BsmAI GTCTC 4 cut(s) 154, 166, 492, 549
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 5 cut(s) 41, 95, 117, 137, 591
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 581
Bsp1286I GDGCHC 2 cut(s) 650, 894
Bsp143I GATC 2 cut(s) 433, 613
Bsp19I CCATGG 1 cut(s) 924
BspACI CCGC 6 cut(s) 35, 38, 73, 527, 931, 988
BspANI GGCC 5 cut(s) 41, 95, 117, 137, 591
BspCNI CTCAG 4 cut(s) 610, 634, 643, 769
BspFNI CGCG 2 cut(s) 73, 127
BspLI GGNNCC 3 cut(s) 6, 27, 881
BspMAI CTGCAG 1 cut(s) 975
BspPI GGATC 2 cut(s) 428, 608
BspT107I GGYRCC 2 cut(s) 25, 879
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 931
BsrDI GCAATG 2 cut(s) 599, 747
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 3 cut(s) 106, 150, 562
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 165, 924
BssMI GATC 2 cut(s) 433, 613
BssNI GRCGYC 2 cut(s) 26, 559
BssT1I CCWWGG 1 cut(s) 924
Bst2UI CCWGG 3 cut(s) 166, 965, 1023
Bst4CI ACNGT 3 cut(s) 247, 410, 980
Bst6I CTCTTC 2 cut(s) 264, 355
BstACI GRCGYC 2 cut(s) 26, 559
BstC8I GCNNGC 4 cut(s) 30, 516, 792, 985
BstDEI CTNAG 6 cut(s) 9, 341, 618, 642, 651, 777
BstDSI CCRYGG 1 cut(s) 924
BstEII GGTNACC 1 cut(s) 1025
BstF5I GGATG 3 cut(s) 262, 424, 685
BstFNI CGCG 2 cut(s) 73, 127
BstH2I RGCGCY 2 cut(s) 29, 86
BstHHI GCGC 3 cut(s) 28, 85, 129
BstKTI GATC 2 cut(s) 436, 616
BstMAI GTCTC 4 cut(s) 154, 166, 492, 549
BstMBI GATC 2 cut(s) 433, 613
BstMWI GCNNNNNNNGC 5 cut(s) 25, 32, 38, 524, 737
BstNI CCWGG 3 cut(s) 166, 965, 1023
BstNSI RCATGY 1 cut(s) 814
BstPI GGTNACC 1 cut(s) 1025
BstSCI CCNGG 3 cut(s) 164, 963, 1021
BstSFI CTRYAG 2 cut(s) 945, 971
BstUI CGCG 2 cut(s) 73, 127
BstV1I GCAGC 5 cut(s) 19, 743, 746, 749, 771
BstV2I GAAGAC 2 cut(s) 411, 663
BstXI CCANNNNNNTGG 1 cut(s) 113
Bsu36I CCTNAGG 2 cut(s) 341, 777
BsuRI GGCC 5 cut(s) 41, 95, 117, 137, 591
BtgI CCRYGG 1 cut(s) 924
BtsCI GGATG 3 cut(s) 262, 424, 685
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 3 cut(s) 113, 415, 594
Cac8I GCNNGC 4 cut(s) 30, 516, 792, 985
CaiI CAGNNNCTG 1 cut(s) 970
CfoI GCGC 3 cut(s) 28, 85, 129
Cfr10I RCCGGY 1 cut(s) 28
CseI GACGC 1 cut(s) 567
CsiI ACCWGGT 1 cut(s) 1021
Csp6I GTAC 3 cut(s) 565, 828, 938
CviAII CATG 9 cut(s) 299, 377, 442, 466, 491, 811, 820, 925, 1047
CviQI GTAC 3 cut(s) 565, 828, 938
DdeI CTNAG 6 cut(s) 9, 341, 618, 642, 651, 777
DinI GGCGCC 1 cut(s) 27
DpnI GATC 2 cut(s) 435, 615
DpnII GATC 2 cut(s) 433, 613
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 2 cut(s) 264, 355
EarI CTCTTC 2 cut(s) 264, 355
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 1 cut(s) 924
Eco24I GRGCYC 2 cut(s) 650, 894
Eco31I GGTCTC 1 cut(s) 154
Eco32I GATATC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 892
Eco81I CCTNAGG 2 cut(s) 341, 777
Eco88I CYCGRG 1 cut(s) 581
Eco91I GGTNACC 1 cut(s) 1025
EcoICRI GAGCTC 1 cut(s) 892
EcoO65I GGTNACC 1 cut(s) 1025
EcoRII CCWGG 3 cut(s) 164, 963, 1021
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 924
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 650, 894
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 924
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 9 cut(s) 302, 380, 445, 469, 494, 814, 823, 928, 1050
FatI CATG 9 cut(s) 298, 376, 441, 465, 490, 810, 819, 924, 1046
FauI CCCGC 1 cut(s) 924
Fnu4HI GCNGC 8 cut(s) 33, 36, 39, 732, 735, 738, 760, 988
FokI GGATG 3 cut(s) 269, 431, 692
FriOI GRGCYC 2 cut(s) 650, 894
Fsp4HI GCNGC 8 cut(s) 33, 36, 39, 732, 735, 738, 760, 988
FspBI CTAG 2 cut(s) 605, 803
GlaI GCGC 3 cut(s) 27, 84, 128
GluI GCNGC 8 cut(s) 33, 36, 39, 732, 735, 738, 760, 988
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 2 cut(s) 29, 86
HaeIII GGCC 5 cut(s) 41, 95, 117, 137, 591
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 567
HhaI GCGC 3 cut(s) 28, 85, 129
Hin1I GRCGYC 2 cut(s) 26, 559
Hin1II CATG 9 cut(s) 302, 380, 445, 469, 494, 814, 823, 928, 1050
Hin6I GCGC 3 cut(s) 26, 83, 127
HinP1I GCGC 3 cut(s) 26, 83, 127
HinfI GANTC 8 cut(s) 122, 455, 485, 542, 629, 713, 950, 1041
HpaII CCGG 1 cut(s) 29
HphI GGTGA 3 cut(s) 894, 1011, 1019
Hpy166II GTNNAC 2 cut(s) 475, 610
Hpy188I TCNGA 7 cut(s) 154, 549, 643, 652, 720, 769, 955
Hpy188III TCNNGA 7 cut(s) 100, 583, 611, 617, 776, 803, 839
Hpy8I GTNNAC 2 cut(s) 475, 610
Hpy99I CGWCG 2 cut(s) 101, 665
HpyAV CCTTC 3 cut(s) 44, 52, 665
HpyCH4III ACNGT 3 cut(s) 247, 410, 980
HpyCH4V TGCA 6 cut(s) 298, 318, 494, 599, 794, 973
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 32, 38, 524, 737
HpyF3I CTNAG 6 cut(s) 9, 341, 618, 642, 651, 777
Hsp92I GRCGYC 2 cut(s) 26, 559
Hsp92II CATG 9 cut(s) 302, 380, 445, 469, 494, 814, 823, 928, 1050
HspAI GCGC 3 cut(s) 26, 83, 127
KasI GGCGCC 1 cut(s) 25
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 433, 613
LmnI GCTCC 2 cut(s) 4, 928
Lsp1109I GCAGC 5 cut(s) 19, 743, 746, 749, 771
MabI ACCWGGT 1 cut(s) 1021
MaeI CTAG 2 cut(s) 605, 803
MaeIII GTNAC 3 cut(s) 410, 856, 1025
MalI GATC 2 cut(s) 435, 615
MbiI CCGCTC 1 cut(s) 931
MboI GATC 2 cut(s) 433, 613
MboII GAAGA 9 cut(s) 221, 281, 314, 372, 413, 416, 542, 668, 695
MfeI CAATTG 1 cut(s) 89
MhlI GDGCHC 2 cut(s) 650, 894
MluCI AATT 4 cut(s) 89, 172, 319, 833
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 2 cut(s) 494, 551
Mph1103I ATGCAT 1 cut(s) 300
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 999
MseI TTAA 4 cut(s) 381, 572, 960, 1035
MslI CAYNNNNRTG 1 cut(s) 470
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 3 cut(s) 166, 965, 1023
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 3 cut(s) 166, 965, 1023
MvnI CGCG 2 cut(s) 73, 127
MwoI GCNNNNNNNGC 5 cut(s) 25, 32, 38, 524, 737
NaeI GCCGGC 1 cut(s) 30
NarI GGCGCC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 924
NdeII GATC 2 cut(s) 433, 613
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 9 cut(s) 302, 380, 445, 469, 494, 814, 823, 928, 1050
NlaIV GGNNCC 3 cut(s) 6, 27, 881
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 410, 1025
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 1 cut(s) 814
PaeR7I CTCGAG 1 cut(s) 581
PcsI WCGNNNNNNNCGW 1 cut(s) 565
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 6 cut(s) 122, 455, 629, 713, 950, 1041
PkrI GCNGC 8 cut(s) 34, 37, 40, 733, 736, 739, 761, 989
PleI GAGTC 2 cut(s) 493, 550
PluTI GGCGCC 1 cut(s) 29
PpsI GAGTC 2 cut(s) 493, 550
PshBI ATTAAT 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 894
Psp6I CCWGG 3 cut(s) 164, 963, 1021
PspEI GGTNACC 1 cut(s) 1025
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 3 cut(s) 164, 963, 1021
PspN4I GGNNCC 3 cut(s) 6, 27, 881
PstI CTGCAG 1 cut(s) 975
PstNI CAGNNNCTG 1 cut(s) 970
RsaI GTAC 3 cut(s) 566, 829, 939
RsaNI GTAC 3 cut(s) 565, 828, 938
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 4 cut(s) 381, 572, 960, 1035
SatI GCNGC 8 cut(s) 33, 36, 39, 732, 735, 738, 760, 988
Sau3AI GATC 2 cut(s) 433, 613
SchI GAGTC 2 cut(s) 494, 551
ScrFI CCNGG 3 cut(s) 166, 965, 1023
SduI GDGCHC 2 cut(s) 650, 894
SexAI ACCWGGT 1 cut(s) 1021
SfcI CTRYAG 2 cut(s) 945, 971
SfoI GGCGCC 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 131, 581
SmoI CTYRAG 2 cut(s) 131, 581
Sse9I AATT 4 cut(s) 89, 172, 319, 833
SsiI CCGC 6 cut(s) 35, 38, 73, 527, 931, 988
SspDI GGCGCC 1 cut(s) 25
SspMI CTAG 2 cut(s) 605, 803
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 3 cut(s) 164, 963, 1021
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 3 cut(s) 247, 410, 980
TaqI TCGA 3 cut(s) 99, 358, 582
TasI AATT 4 cut(s) 89, 172, 319, 833
TatI WGTACW 1 cut(s) 827
TauI GCSGC 3 cut(s) 38, 41, 990
TfiI GAWTC 6 cut(s) 122, 455, 629, 713, 950, 1041
Tru1I TTAA 4 cut(s) 381, 572, 960, 1035
Tru9I TTAA 4 cut(s) 381, 572, 960, 1035
TscAI CASTG 3 cut(s) 113, 415, 601
TseFI GTSAC 2 cut(s) 410, 1025
TseI GCWGC 5 cut(s) 32, 731, 734, 737, 759
Tsp45I GTSAC 2 cut(s) 410, 1025
TspDTI ATGAA 9 cut(s) 315, 414, 447, 458, 696, 702, 808, 858, 933
TspGWI ACGGA 1 cut(s) 887
TspRI CASTG 3 cut(s) 113, 415, 601
VspI ATTAAT 1 cut(s) 572
XapI RAATTY 1 cut(s) 833
XbaI TCTAGA 1 cut(s) 802
XceI RCATGY 1 cut(s) 814
XhoI CTCGAG 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 2 cut(s) 605, 803
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.