AT5G27990

Pre-rRNA-processing protein TSR2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000787
Physical Location & Seq
Forward (+)
10016662 .. 10018526
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27990.1

Sequence Viewer

Length: 555 bp
ATGAATCAAAACGCCACGTTGACGGTGGAGGCTAGGGATATACTGAAAGAAGGAATCGGTTTGATACTTTGGCGGTGGACTGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCCAAAGCCAACGAAACCGTTGCCACTGTTTTCGACTTTTTCATCCAATCAAAAGATCCAGTGAAGGACATTGAGAAATTAGGTGACCTTCTAGATAAAGGTCTTGATGAGCTTAATACTACAGCTGAAGATGGAAGTGTCGATGAGGTGGCGAACTTACTAGTAGATTTGTACGAAGATTGCTGTAACGGTAACTATGAAATGCTTGAGGAACTAAGGGCAACTTATTCTCAGACGAGTGCAAGTGTTGTCAAGGTTTCAAACGGTGATGACGAGGAAAGTGATGATGAAGATGATGATCAAACCACTGACATGATGGTGGATGCGTCTAACCAGAAACAAGAAGCCATGCCTGTTGATGAACCAGTAGCCGATGATGGTTGGACGGTTGTTTCGTCTAGAAAAAACAAGGGAAAGAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

184

Amino Acids

20.36

Weight (kDa)

4.11

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 95 4.1e-21 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 73, 93, 114
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 1 cut(s) 302
AgsI TTSAA 1 cut(s) 390
AhlI ACTAGT 1 cut(s) 289
AluBI AGCT 2 cut(s) 241, 254
AluI AGCT 2 cut(s) 241, 254
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AsuHPI GGTGA 2 cut(s) 224, 407
BccI CCATC 3 cut(s) 254, 439, 500
BceAI ACGGC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 4 cut(s) 33, 221, 290, 528
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 93, 115
BlsI GCNGC 2 cut(s) 94, 116
BmsI GCATC 1 cut(s) 442
BpuEI CTTGAG 2 cut(s) 111, 356
BsaBI GATNNNNATC 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 188, 494
Bse8I GATNNNNATC 1 cut(s) 426
BseGI GGATG 2 cut(s) 171, 457
BseJI GATNNNNATC 1 cut(s) 426
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 188, 494
BseX3I CGGCCG 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 184, 427
BspACI CCGC 3 cut(s) 73, 93, 114
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 373
BspPI GGATC 1 cut(s) 179
BsrI ACTGG 2 cut(s) 188, 494
BssMI GATC 2 cut(s) 184, 427
Bst4CI ACNGT 7 cut(s) 25, 107, 148, 157, 320, 395, 517
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 344, 360
BstEII GGTNACC 1 cut(s) 212
BstF5I GGATG 2 cut(s) 171, 457
BstKTI GATC 2 cut(s) 187, 430
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 184, 427
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BstZI CGGCCG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 171, 457
BtsIMutI CAGTG 3 cut(s) 153, 195, 435
Cac8I GCNNGC 1 cut(s) 90
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 301
CviAII CATG 2 cut(s) 442, 478
CviJI RGCY 9 cut(s) 32, 92, 117, 131, 137, 241, 254, 476, 500
CviKI_1 RGCY 9 cut(s) 32, 92, 117, 131, 137, 241, 254, 476, 500
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 2 cut(s) 344, 360
DpnI GATC 2 cut(s) 186, 429
DpnII GATC 2 cut(s) 184, 427
EaeI YGGCCR 1 cut(s) 115
EagI CGGCCG 1 cut(s) 115
EclXI CGGCCG 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 212
EcoO65I GGTNACC 1 cut(s) 212
FaeI CATG 2 cut(s) 445, 481
FaiI YATR 5 cut(s) 41, 86, 327, 443, 479
FalI AAGNNNNNCTT 2 cut(s) 337, 369
FatI CATG 2 cut(s) 441, 477
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 93, 115
FokI GGATG 2 cut(s) 158, 464
Fsp4HI GCNGC 2 cut(s) 93, 115
FspBI CTAG 4 cut(s) 33, 221, 290, 528
GluI GCNGC 2 cut(s) 93, 115
HaeIII GGCC 1 cut(s) 117
HgaI GACGC 1 cut(s) 444
Hin1II CATG 2 cut(s) 445, 481
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 3 cut(s) 4, 54, 122
HphI GGTGA 2 cut(s) 224, 407
Hpy166II GTNNAC 2 cut(s) 21, 78
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 3 cut(s) 221, 233, 528
Hpy8I GTNNAC 2 cut(s) 21, 78
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 44, 187, 227
HpyCH4III ACNGT 7 cut(s) 25, 107, 148, 157, 320, 395, 517
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 344, 360
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 445, 481
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 184, 427
LpnPI CCDG 4 cut(s) 201, 476, 495, 507
LweI GCATC 1 cut(s) 442
MaeI CTAG 4 cut(s) 33, 221, 290, 528
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 212, 314, 320
MalI GATC 2 cut(s) 186, 429
MboI GATC 2 cut(s) 184, 427
MboII GAAGA 3 cut(s) 269, 317, 431
MflI RGATCY 1 cut(s) 184
MluCI AATT 2 cut(s) 206, 550
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 5 cut(s) 22, 268, 331, 397, 540
MseI TTAA 2 cut(s) 243, 553
MslI CAYNNNNRTG 2 cut(s) 440, 446
MspA1I CMGCKG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 184, 427
NlaIII CATG 2 cut(s) 445, 481
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 2 cut(s) 399, 521
PfeI GAWTC 2 cut(s) 4, 54
PkrI GCNGC 2 cut(s) 94, 116
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 2 cut(s) 440, 446
SaqAI TTAA 2 cut(s) 243, 553
SatI GCNGC 2 cut(s) 93, 115
Sau3AI GATC 2 cut(s) 184, 427
SchI GAGTC 1 cut(s) 116
SetI ASST 8 cut(s) 20, 214, 219, 232, 243, 256, 279, 387
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 440, 446
SmlI CTYRAG 2 cut(s) 126, 335
SmoI CTYRAG 2 cut(s) 126, 335
SpeI ACTAGT 1 cut(s) 289
Sse9I AATT 2 cut(s) 206, 550
SsiI CCGC 3 cut(s) 73, 93, 114
SspMI CTAG 4 cut(s) 33, 221, 290, 528
TaaI ACNGT 7 cut(s) 25, 107, 148, 157, 320, 395, 517
TaiI ACGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 99, 162, 270
TasI AATT 2 cut(s) 206, 550
TauI GCSGC 2 cut(s) 95, 117
TfiI GAWTC 2 cut(s) 4, 54
Tru1I TTAA 2 cut(s) 243, 553
Tru9I TTAA 2 cut(s) 243, 553
TscAI CASTG 3 cut(s) 160, 195, 442
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 5 cut(s) 17, 160, 342, 432, 504
TspRI CASTG 3 cut(s) 160, 195, 442
XbaI TCTAGA 2 cut(s) 220, 527
XcmI CCANNNNNNNNNTGG 2 cut(s) 22, 442
XspI CTAG 4 cut(s) 33, 221, 290, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.