Rh5AG502700

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000787
Physical Location & Seq
Reverse (-)
85060674 .. 85063781
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG502700.1

Sequence Viewer

Length: 579 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGGCGGCTGTGGCGGCGTTCCAAGAAGGGGTCGGGTTAGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTTGAGAACGAGTGGGGTGGCCGTGACTCGCGCCTCAAGGCCGAGCAACTCCTCTCCGATATCGTCTCCTGGGTCAATCACTCCACCGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTCTCTCAATACTGTGATAGAGGATGGTAGCATTGAGGAGGTAGCTGAAAAATTAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAAGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCGACTCTTCATGTTAAACAGGTTGTGGATGACGATGAAGACAGTGATGATAATGATGATACTGATCCTAGCATGAATAAAGATGAGTCATCAAACATGAATGTGGACAAACCAGAGTCTCATGCAGTAGAGCCAAAGACCAGGCAGGCAGTTGAAGCAGAAGATGGTTGGGAGGTAGTCGGACCAAGAAGAAGTAGGGGTAAAAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

192

Amino Acids

21.6

Weight (kDa)

4.43

Isoelectric Point (pI)

66.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 94 1.8e-25 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 73, 127
AciI CCGC 4 cut(s) 26, 29, 38, 73
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 2 cut(s) 93, 115
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 5 cut(s) 89, 224, 325, 335, 521
AjnI CCWGG 2 cut(s) 164, 506
AluBI AGCT 3 cut(s) 19, 227, 278
AluI AGCT 3 cut(s) 19, 227, 278
Alw26I GTCTC 2 cut(s) 166, 489
AlwI GGATC 1 cut(s) 425
AoxI GGCC 3 cut(s) 93, 115, 135
AseI ATTAAT 1 cut(s) 287
AspLEI GCGC 2 cut(s) 85, 129
AspS9I GGNCC 1 cut(s) 548
AvaII GGWCC 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 411
BccI CCATC 2 cut(s) 251, 524
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 2 cut(s) 166, 508
BcoDI GTCTC 2 cut(s) 166, 489
BfaI CTAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 3 cut(s) 27, 30, 39
BlsI GCNGC 3 cut(s) 28, 31, 40
Bme1390I CCNGG 2 cut(s) 166, 508
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 166, 508
BpiI GAAGAC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse21I CCTNAGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 2 cut(s) 166, 508
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 262, 400
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 137, 284
Bsh1236I CGCG 2 cut(s) 73, 127
BshFI GGCC 3 cut(s) 95, 117, 137
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 166, 489
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 3 cut(s) 95, 117, 137
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 4 cut(s) 26, 29, 38, 73
BspANI GGCC 3 cut(s) 95, 117, 137
BspFNI CGCG 2 cut(s) 73, 127
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 430
Bst2UI CCWGG 2 cut(s) 166, 508
Bst4CI ACNGT 2 cut(s) 247, 410
Bst6I CTCTTC 2 cut(s) 355, 378
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 2 cut(s) 9, 341
BstF5I GGATG 2 cut(s) 262, 400
BstFNI CGCG 2 cut(s) 73, 127
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 129
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 2 cut(s) 166, 489
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 3 cut(s) 35, 38, 521
BstNI CCWGG 2 cut(s) 166, 508
BstSCI CCNGG 2 cut(s) 164, 506
BstUI CGCG 2 cut(s) 73, 127
BstV2I GAAGAC 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 3 cut(s) 95, 117, 137
BtsCI GGATG 2 cut(s) 262, 400
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 2 cut(s) 85, 129
Cfr13I GGNCC 1 cut(s) 548
CviAII CATG 5 cut(s) 299, 377, 439, 463, 488
DdeI CTNAG 2 cut(s) 9, 341
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 2 cut(s) 355, 378
EarI CTCTTC 2 cut(s) 355, 378
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 548
Eco81I CCTNAGG 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 164, 506
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 5 cut(s) 302, 380, 442, 466, 491
FaiI YATR 9 cut(s) 195, 197, 230, 296, 300, 378, 440, 464, 489
FatI CATG 5 cut(s) 298, 376, 438, 462, 487
Fnu4HI GCNGC 3 cut(s) 27, 30, 39
FokI GGATG 2 cut(s) 269, 407
Fsp4HI GCNGC 3 cut(s) 27, 30, 39
FspBI CTAG 1 cut(s) 435
GlaI GCGC 2 cut(s) 84, 128
GluI GCNGC 3 cut(s) 27, 30, 39
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 3 cut(s) 95, 117, 137
HhaI GCGC 2 cut(s) 85, 129
Hin1II CATG 5 cut(s) 302, 380, 442, 466, 491
Hin6I GCGC 2 cut(s) 83, 127
HinP1I GCGC 2 cut(s) 83, 127
HinfI GANTC 4 cut(s) 122, 370, 452, 482
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 3 cut(s) 154, 369, 548
Hpy8I GTNNAC 1 cut(s) 472
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 247, 410
HpyCH4V TGCA 3 cut(s) 298, 318, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 38, 521
HpyF3I CTNAG 2 cut(s) 9, 341
Hsp92II CATG 5 cut(s) 302, 380, 442, 466, 491
HspAI GCGC 2 cut(s) 83, 127
Kzo9I GATC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 21, 151, 178, 371, 492, 493, 497, 520
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 7 cut(s) 221, 314, 365, 372, 416, 539, 567
MfeI CAATTG 1 cut(s) 89
MluCI AATT 4 cut(s) 89, 284, 319, 574
MlyI GAGTC 4 cut(s) 116, 364, 461, 491
MmeI TCCRAC 2 cut(s) 392, 526
MnlI CCTC 7 cut(s) 140, 158, 198, 247, 262, 265, 532
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 2 cut(s) 287, 381
MslI CAYNNNNRTG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 166, 508
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 2 cut(s) 166, 508
MvnI CGCG 2 cut(s) 73, 127
MwoI GCNNNNNNNGC 3 cut(s) 35, 38, 521
NdeII GATC 1 cut(s) 430
NlaIII CATG 5 cut(s) 302, 380, 442, 466, 491
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 300
PkrI GCNGC 3 cut(s) 28, 31, 40
PleI GAGTC 4 cut(s) 116, 364, 460, 490
PpsI GAGTC 4 cut(s) 116, 364, 460, 490
PshBI ATTAAT 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 164, 506
PspGI CCWGG 2 cut(s) 164, 506
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 2 cut(s) 287, 381
SatI GCNGC 3 cut(s) 27, 30, 39
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 4 cut(s) 116, 364, 461, 491
ScrFI CCNGG 2 cut(s) 166, 508
SetI ASST 7 cut(s) 21, 190, 229, 276, 280, 390, 543
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 4 cut(s) 89, 284, 319, 574
SsiI CCGC 4 cut(s) 26, 29, 38, 73
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 164, 506
TaaI ACNGT 2 cut(s) 247, 410
TaqI TCGA 1 cut(s) 358
TasI AATT 4 cut(s) 89, 284, 319, 574
TauI GCSGC 3 cut(s) 29, 32, 41
Tru1I TTAA 2 cut(s) 287, 381
Tru9I TTAA 2 cut(s) 287, 381
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 5 cut(s) 315, 365, 417, 455, 479
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 548
VspI ATTAAT 1 cut(s) 287
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.