Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

38718537 .. 38719397

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52702.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAACCAGAGAGAAAGTTGATGGTGGCGGCCGCGACGGAGTCCCAAGAAGGCGTGGGATTAGTTCTGTCCCGGTGGTTGGCGCTTCAGTTGGCCGTCAAGAACAAGTGGGGTGGGCACGACTCGCGCCACTCTTATCCCATATCGTCTCCTGGTCGATTGAAAGATGAGTTCAAGAGTTCCTACTATCCTCATGTCACACAGGTTGTGGATGATGACGAAGACTCTCATGCAAGAGAGTCACAGACCAAGCAGGCAGTTGAAGCAGAAGATGGTTGGGAGCCAGGTACGGACCAAGAAGAGGAAGGGTCAAAAAGATCGTTAGACATAGACCCGGGTTTCGACTTTCGGGCAACTAGGGAAATGACGTCGGTGGAATCATCCTTGGATCTACACACTTTCTCAAGCGGACAGGAGGTTGTGACGGTCATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

146

Amino Acids

16.18

Weight (kDa)

4.68

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WGG	PF10273	16 - 44	2e-07	Pre-rRNA-processing protein TSR2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	371
AccII	CGCG	2 cut(s)	35, 127
AciI	CCGC	3 cut(s)	29, 33, 408
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	2 cut(s)	30, 93
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	79, 301
AgsI	TTSAA	3 cut(s)	163, 175, 263
AjnI	CCWGG	2 cut(s)	151, 283
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	396
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	2 cut(s)	30, 93
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	2 cut(s)	85, 129
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	3 cut(s)	73, 335, 336
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	228
BccI	CCATC	2 cut(s)	16, 266
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	2 cut(s)	153, 285
BcnI	CCSGG	3 cut(s)	73, 335, 336
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	2 cut(s)	30, 33
BlsI	GCNGC	2 cut(s)	31, 34
Bme1390I	CCNGG	5 cut(s)	73, 153, 285, 335, 336
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	6, 282
BmrFI	CCNGG	5 cut(s)	73, 153, 285, 335, 336
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	388
BpuMI	CCSGG	3 cut(s)	73, 335, 336
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	334, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 301
BseBI	CCWGG	2 cut(s)	153, 285
BseDI	CCNNGG	2 cut(s)	334, 384
BseGI	GGATG	2 cut(s)	217, 380
BseLI	CCNNNNNNNGG	2 cut(s)	79, 301
BseSI	GKGCMC	1 cut(s)	120
BseX3I	CGGCCG	1 cut(s)	30
Bsh1236I	CGCG	2 cut(s)	35, 127
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	32, 95
BsiEI	CGRYCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	73, 335
BslFI	GGGAC	2 cut(s)	28, 55
BslI	CCNNNNNNNGG	2 cut(s)	79, 301
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	2 cut(s)	28, 55
BsnI	GGCC	2 cut(s)	32, 95
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	317, 388
BspACI	CCGC	3 cut(s)	29, 33, 408
BspANI	GGCC	2 cut(s)	32, 95
BspFNI	CGCG	2 cut(s)	35, 127
BspLI	GGNNCC	2 cut(s)	6, 282
BspPI	GGATC	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	334, 384
BssMI	GATC	2 cut(s)	317, 388
BssNI	GRCGYC	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	153, 285
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	217, 380
BstFNI	CGCG	2 cut(s)	35, 127
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 129
BstKTI	GATC	2 cut(s)	320, 391
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	2 cut(s)	317, 388
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 263
BstNI	CCWGG	2 cut(s)	153, 285
BstSCI	CCNGG	5 cut(s)	71, 151, 283, 333, 334
BstSLI	GKGCMC	1 cut(s)	120
BstUI	CGCG	2 cut(s)	35, 127
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	32, 95
BtsCI	GGATG	2 cut(s)	217, 380
Cac8I	GCNNGC	1 cut(s)	255
CciNI	GCGGCCGC	1 cut(s)	30
CfoI	GCGC	2 cut(s)	85, 129
Cfr13I	GGNCC	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	288
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	3 cut(s)	194, 230, 435
CviJI	RGCY	3 cut(s)	32, 95, 283
CviKI_1	RGCY	3 cut(s)	32, 95, 283
CviQI	GTAC	1 cut(s)	288
DpnI	GATC	2 cut(s)	319, 390
DpnII	GATC	2 cut(s)	317, 388
EaeI	YGGCCR	2 cut(s)	30, 93
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	151, 283
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	3 cut(s)	197, 233, 438
FaiI	YATR	5 cut(s)	143, 195, 231, 329, 436
FaqI	GGGAC	2 cut(s)	28, 55
FatI	CATG	3 cut(s)	193, 229, 434
Fnu4HI	GCNGC	2 cut(s)	30, 33
FokI	GGATG	2 cut(s)	224, 367
Fsp4HI	GCNGC	2 cut(s)	30, 33
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	2 cut(s)	84, 128
GluI	GCNGC	2 cut(s)	30, 33
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	32, 95
HapII	CCGG	2 cut(s)	73, 335
HhaI	GCGC	2 cut(s)	85, 129
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	3 cut(s)	197, 233, 438
Hin6I	GCGC	2 cut(s)	83, 127
HinP1I	GCGC	2 cut(s)	83, 127
HinfI	GANTC	5 cut(s)	41, 122, 224, 239, 377
HpaII	CCGG	2 cut(s)	73, 335
Hpy188III	TCNNGA	2 cut(s)	100, 175
Hpy99I	CGWCG	2 cut(s)	40, 373
HpyAV	CCTTC	2 cut(s)	44, 299
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 263
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	197, 233, 438
HspAI	GCGC	2 cut(s)	83, 127
Kzo9I	GATC	2 cut(s)	317, 388
LmnI	GCTCC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	3 cut(s)	196, 240, 421
MalI	GATC	2 cut(s)	319, 390
MboI	GATC	2 cut(s)	317, 388
MboII	GAAGA	3 cut(s)	233, 281, 311
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	120
MlyI	GAGTC	4 cut(s)	50, 116, 218, 248
MnlI	CCTC	3 cut(s)	201, 295, 409
MspI	CCGG	2 cut(s)	73, 335
MspR9I	CCNGG	5 cut(s)	73, 153, 285, 335, 336
MvaI	CCWGG	2 cut(s)	153, 285
MvnI	CGCG	2 cut(s)	35, 127
MwoI	GCNNNNNNNGC	2 cut(s)	124, 263
NciI	CCSGG	3 cut(s)	73, 335, 336
NdeII	GATC	2 cut(s)	317, 388
NlaIII	CATG	3 cut(s)	197, 233, 438
NlaIV	GGNNCC	2 cut(s)	6, 282
NmuCI	GTSAC	3 cut(s)	196, 240, 421
NotI	GCGGCCGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	377
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	31, 34
PleI	GAGTC	4 cut(s)	49, 116, 218, 247
PpsI	GAGTC	4 cut(s)	49, 116, 218, 247
Psp6I	CCWGG	2 cut(s)	151, 283
PspGI	CCWGG	2 cut(s)	151, 283
PspN4I	GGNNCC	2 cut(s)	6, 282
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	388
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SatI	GCNGC	2 cut(s)	30, 33
Sau3AI	GATC	2 cut(s)	317, 388
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	4 cut(s)	50, 116, 218, 248
ScrFI	CCNGG	5 cut(s)	73, 153, 285, 335, 336
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	207, 289, 371, 420
SinI	GGWCC	1 cut(s)	292
SmaI	CCCGGG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
SsiI	CCGC	3 cut(s)	29, 33, 408
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	5 cut(s)	71, 151, 283, 333, 334
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	157, 342
TauI	GCSGC	2 cut(s)	32, 35
TfiI	GAWTC	1 cut(s)	377
TseFI	GTSAC	3 cut(s)	196, 240, 421
Tsp45I	GTSAC	3 cut(s)	196, 240, 421
TspGWI	ACGGA	2 cut(s)	53, 305
TspMI	CCCGGG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	292
XmaI	CCCGGG	1 cut(s)	334
XspI	CTAG	1 cut(s)	357
ZraI	GACGTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.