Rmu_sc0002880.1_g000002

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002880.1
OG0000787
Physical Location & Seq
Forward (+)
4141 .. 4596
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002880.1_g000002.1.cds

Sequence Viewer

Length: 399 bp
atgacatccccatggccggctgcggctgtgttcgaagaatgggtccgattagttctatcgcggtggtcgacgcttcaattggtcgtcgagaacgagtggggtagccgtgattcgagcctcaagatcgagcaactcatctttgatgtcctctcttgggatttcaagcccggccaggtctacctcatcatcaaggatctcgtcaccagcagcgcttctattctcgagaccttcgtgccgctcagagtcgtcgggttgaaggccagtgacgccgtcgttttgatcggccgggctaaggagttattatctctggtcttcattgctttggcctcaattcccacttcatacacatgtcgatctattattggccgtggtcaacccaagctaaccagggctggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

132

Amino Acids

14.63

Weight (kDa)

8.89

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 2 cut(s) 68, 177
AccII CGCG 1 cut(s) 61
AciI CCGC 3 cut(s) 23, 61, 236
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 4 cut(s) 14, 169, 283, 364
AcyI GRCGYC 1 cut(s) 267
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 3 cut(s) 16, 154, 292
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 3 cut(s) 77, 163, 256
AjnI CCWGG 2 cut(s) 171, 386
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 211
AoxI GGCC 6 cut(s) 14, 169, 258, 283, 324, 364
ApeKI GCWGC 2 cut(s) 20, 207
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 2 cut(s) 168, 287
AsuHPI GGTGA 1 cut(s) 193
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 7, 219
BceAI ACGGC 3 cut(s) 90, 254, 351
BciT130I CCWGG 2 cut(s) 173, 388
BcnI CCSGG 2 cut(s) 168, 287
BcoDI GTCTC 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 4 cut(s) 21, 24, 208, 236
BlsI GCNGC 4 cut(s) 22, 25, 209, 237
Bme1390I CCNGG 4 cut(s) 168, 173, 287, 388
Bme18I GGWCC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 4 cut(s) 168, 173, 287, 388
BpiI GAAGAC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 168, 287
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 11, 367, 387
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 154, 292
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 2 cut(s) 173, 388
BseDI CCNNGG 3 cut(s) 11, 367, 387
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 3 cut(s) 16, 154, 292
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 261
BseX3I CGGCCG 1 cut(s) 283
BseXI GCAGC 2 cut(s) 7, 219
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 6 cut(s) 16, 171, 260, 285, 326, 366
BsiEI CGRYCG 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 3 cut(s) 17, 168, 286
BslI CCNNNNNNNGG 3 cut(s) 16, 154, 292
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 6 cut(s) 16, 171, 260, 285, 326, 366
Bso31I GGTCTC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 33
Bsp143I GATC 4 cut(s) 123, 193, 279, 353
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 3 cut(s) 23, 61, 236
BspANI GGCC 6 cut(s) 16, 171, 260, 285, 326, 366
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 1 cut(s) 201
BspT104I TTCGAA 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 11, 367, 387
BssMI GATC 4 cut(s) 123, 193, 279, 353
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 173, 388
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 239, 291
BstDSI CCRYGG 2 cut(s) 11, 367
BstF5I GGATG 1 cut(s) 5
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 4 cut(s) 126, 196, 282, 356
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 4 cut(s) 123, 193, 279, 353
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 2 cut(s) 173, 388
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 4 cut(s) 166, 171, 285, 386
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 7, 219
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BstZI CGGCCG 1 cut(s) 283
BsuRI GGCC 6 cut(s) 16, 171, 260, 285, 326, 366
BtgI CCRYGG 2 cut(s) 11, 367
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 2 cut(s) 79, 275
CviAII CATG 2 cut(s) 12, 348
DdeI CTNAG 2 cut(s) 239, 291
DpnI GATC 4 cut(s) 125, 195, 281, 355
DpnII GATC 4 cut(s) 123, 193, 279, 353
EaeI YGGCCR 4 cut(s) 14, 169, 283, 364
EagI CGGCCG 1 cut(s) 283
EclXI CGGCCG 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 43
Eco47III AGCGCT 1 cut(s) 211
Eco52I CGGCCG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 171, 386
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 2 cut(s) 15, 351
FaiI YATR 3 cut(s) 13, 343, 349
FatI CATG 2 cut(s) 11, 347
FblI GTMKAC 2 cut(s) 68, 177
Fnu4HI GCNGC 4 cut(s) 21, 24, 208, 236
Fsp4HI GCNGC 4 cut(s) 21, 24, 208, 236
GlaI GCGC 1 cut(s) 211
GluI GCNGC 4 cut(s) 21, 24, 208, 236
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 6 cut(s) 16, 171, 260, 285, 326, 366
HapII CCGG 3 cut(s) 17, 168, 286
HgaI GACGC 2 cut(s) 79, 275
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 2 cut(s) 15, 351
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HincII GTYRAC 2 cut(s) 69, 374
HindII GTYRAC 2 cut(s) 69, 374
HinfI GANTC 2 cut(s) 110, 243
HpaII CCGG 3 cut(s) 17, 168, 286
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 3 cut(s) 69, 178, 374
Hpy188I TCNGA 2 cut(s) 47, 242
Hpy188III TCNNGA 4 cut(s) 88, 121, 221, 223
Hpy8I GTNNAC 3 cut(s) 69, 178, 374
Hpy99I CGWCG 4 cut(s) 73, 89, 251, 275
HpyAV CCTTC 2 cut(s) 238, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 239, 291
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 15, 351
HspAI GCGC 1 cut(s) 210
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 4 cut(s) 123, 193, 279, 353
Lsp1109I GCAGC 2 cut(s) 7, 219
MaeIII GTNAC 2 cut(s) 199, 263
MalI GATC 4 cut(s) 125, 195, 281, 355
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 123, 193, 279, 353
MboII GAAGA 2 cut(s) 47, 304
MfeI CAATTG 1 cut(s) 77
MflI RGATCY 1 cut(s) 193
MluCI AATT 2 cut(s) 77, 330
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 4 cut(s) 128, 158, 191, 337
MroNI GCCGGC 1 cut(s) 16
MslI CAYNNNNRTG 2 cut(s) 10, 346
MspI CCGG 3 cut(s) 17, 168, 286
MspR9I CCNGG 4 cut(s) 168, 173, 287, 388
MunI CAATTG 1 cut(s) 77
MvaI CCWGG 2 cut(s) 173, 388
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 266
NaeI GCCGGC 1 cut(s) 18
NciI CCSGG 2 cut(s) 168, 287
NcoI CCATGG 1 cut(s) 11
NdeII GATC 4 cut(s) 123, 193, 279, 353
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 2 cut(s) 15, 351
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 199, 263
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 33
PaeR7I CTCGAG 1 cut(s) 221
PciI ACATGT 1 cut(s) 347
PcsI WCGNNNNNNNCGW 3 cut(s) 65, 90, 228
PdiI GCCGGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 110
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 22, 25, 209, 237
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PscI ACATGT 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 171, 386
PspGI CCWGG 2 cut(s) 171, 386
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 10, 346
SalI GTCGAC 1 cut(s) 67
SatI GCNGC 4 cut(s) 21, 24, 208, 236
Sau3AI GATC 4 cut(s) 123, 193, 279, 353
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 4 cut(s) 168, 173, 287, 388
SetI ASST 4 cut(s) 177, 183, 230, 384
Sfr274I CTCGAG 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 10, 346
SmlI CTYRAG 2 cut(s) 119, 221
SmoI CTYRAG 2 cut(s) 119, 221
Sse9I AATT 2 cut(s) 77, 330
SsiI CCGC 3 cut(s) 23, 61, 236
StyD4I CCNGG 4 cut(s) 166, 171, 285, 386
StyI CCWWGG 1 cut(s) 11
TaqI TCGA 7 cut(s) 33, 68, 87, 113, 126, 222, 352
TasI AATT 2 cut(s) 77, 330
TauI GCSGC 2 cut(s) 26, 238
TfiI GAWTC 1 cut(s) 110
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 2 cut(s) 199, 263
TseI GCWGC 2 cut(s) 20, 207
Tsp45I GTSAC 2 cut(s) 199, 263
TspDTI ATGAA 2 cut(s) 304, 330
TspRI CASTG 1 cut(s) 268
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 43
XceI RCATGY 1 cut(s) 351
XhoI CTCGAG 1 cut(s) 221
XmiI GTMKAC 2 cut(s) 68, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.