Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Reverse (-)

28541807 .. 28542172

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGTGGGGTGGCCATGACTCGCGCCTCAAGACCGAGCAACTCGTCCCCAATGTCATCTCCTGGGTCAATCACTCCACCATTAAGCTTTAACTCGTCAAGTTCTTTCCTTTTTCTGGTCAAGGACTCAAGGACTACGGTACGCCAAAGCCATCAAAGGCATTTCAAGCCCGACCAGGTCTATCTCATCATCAAGGACCTCGTCACCAACAGCGCCTCCGTTCTCGAGACCGTTGCGCCGCTCGGAATCGTCGGATTGAAGGTCGGTGACGCCGTCGTTTTGATCGGTCGGGTTGAGGAGTTATTATCCCCTGCTCTTCTTTGCTTTGGCCTCGATTCCCATTTTATACACGTGTTGTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

OMPdecase Pribosyltran

Protein Analysis

121

Amino Acids

13.01

Weight (kDa)

9.03

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	241
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	2 cut(s)	349, 351
AgsI	TTSAA	2 cut(s)	166, 259
AjnI	CCWGG	2 cut(s)	61, 174
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	12, 328
AspLEI	GCGC	3 cut(s)	26, 215, 238
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	196, 278
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	352
BccI	CCATC	1 cut(s)	159
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	2 cut(s)	63, 176
BcoDI	GTCTC	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	63, 176
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	63, 176
BpuEI	CTTGAG	2 cut(s)	13, 112
BsaAI	YACGTR	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	63, 176
BseDI	CCNNGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	14, 330
BsiEI	CGRYCG	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	14, 330
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	14, 330
BspFNI	CGCG	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	282
BssNI	GRCGYC	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	63, 176
Bst4CI	ACNGT	2 cut(s)	139, 232
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	3 cut(s)	26, 215, 238
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	282
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	63, 176
BstSCI	CCNGG	2 cut(s)	61, 174
BstUI	CGCG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	14, 330
CfoI	GCGC	3 cut(s)	26, 215, 238
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	278
CsiI	ACCWGGT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	5 cut(s)	14, 87, 150, 169, 330
CviKI_1	RGCY	5 cut(s)	14, 87, 150, 169, 330
CviQI	GTAC	1 cut(s)	140
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	196
Eco72I	CACGTG	1 cut(s)	352
Eco88I	CYCGRG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	61, 174
FaeI	CATG	1 cut(s)	19
FaiI	YATR	2 cut(s)	17, 347
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
GlaI	GCGC	3 cut(s)	25, 214, 237
GluI	GCNGC	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	14, 330
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	3 cut(s)	26, 215, 238
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	3 cut(s)	24, 213, 236
HinP1I	GCGC	3 cut(s)	24, 213, 236
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	4 cut(s)	19, 125, 246, 335
HphI	GGTGA	2 cut(s)	196, 278
Hpy188I	TCNGA	2 cut(s)	245, 254
Hpy188III	TCNNGA	3 cut(s)	30, 224, 226
Hpy99I	CGWCG	2 cut(s)	254, 278
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	139, 232
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	3 cut(s)	24, 213, 236
Kzo9I	GATC	1 cut(s)	282
LguI	GCTCTTC	1 cut(s)	321
LpnPI	CCDG	6 cut(s)	48, 75, 101, 161, 188, 324
MabI	ACCWGGT	1 cut(s)	174
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	202, 266
MalI	GATC	1 cut(s)	284
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	308
MlsI	TGGCCA	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	13, 119
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	5 cut(s)	37, 209, 226, 289, 341
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	3 cut(s)	83, 90, 364
Msp20I	TGGCCA	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	63, 176
MvaI	CCWGG	2 cut(s)	63, 176
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	19
NmuCI	GTSAC	2 cut(s)	202, 266
PaeR7I	CTCGAG	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	246, 335
PflFI	GACNNNGTC	3 cut(s)	176, 200, 272
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	2 cut(s)	13, 119
PmaCI	CACGTG	1 cut(s)	352
PmlI	CACGTG	1 cut(s)	352
PpsI	GAGTC	2 cut(s)	13, 119
Ppu21I	YACGTR	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	61, 174
PspCI	CACGTG	1 cut(s)	352
PspGI	CCWGG	2 cut(s)	61, 174
PspPI	GGNCC	1 cut(s)	196
PspPPI	RGGWCCY	1 cut(s)	196
PsyI	GACNNNGTC	3 cut(s)	176, 200, 272
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	83, 90, 364
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	13, 119
ScrFI	CCNGG	2 cut(s)	63, 176
SetI	ASST	5 cut(s)	89, 180, 201, 264, 354
SexAI	ACCWGGT	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	28, 127, 224
SmoI	CTYRAG	3 cut(s)	28, 127, 224
SsiI	CCGC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	61, 174
TaaI	ACNGT	2 cut(s)	139, 232
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	225, 333
TaqII	GACCGA	2 cut(s)	49, 275
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	246, 335
Tru1I	TTAA	3 cut(s)	83, 90, 364
Tru9I	TTAA	3 cut(s)	83, 90, 364
TseFI	GTSAC	2 cut(s)	202, 266
Tsp45I	GTSAC	2 cut(s)	202, 266
TspGWI	ACGGA	1 cut(s)	208
Tth111I	GACNNNGTC	3 cut(s)	176, 200, 272
VpaK11BI	GGWCC	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.