MD11G1033400.v1.1

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000787
Physical Location & Seq
Forward (+)
2896637 .. 2898063
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1033400.v1.1.491

Sequence Viewer

Length: 345 bp
ATGCTTTCTCTCAACACTATGACAGAGGATGGCAGCATTGAGGAGGTAGCTGAAAAGCTAATGATTATGTATGAAGAATGTTTAGATTGTAATTTCAATTCGATTGAAAGCCTAAGGGAAGCCAATCAACGAAAAGTTGCTCTTCCGCATGTTAGAGAGGTTGCAAATGATGACGATGACGATGAAGATAATGATGATAGAGATCATAGCATGGGAAATGATGATTCCTCGAACATGATAGTAGACATACCAGAGGCTCATTCAAACTTAAATCCCGTACACGCGTATCAGGCAATGAGCCAAAGCCCAAGACGGCGGCCGAAGCAGAAGATGGATGGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

115

Amino Acids

13.04

Weight (kDa)

4.43

Isoelectric Point (pI)

67.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 284
AciI CCGC 2 cut(s) 146, 316
AcoI YGGCCR 1 cut(s) 317
AfaI GTAC 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 3 cut(s) 97, 107, 264
AluBI AGCT 2 cut(s) 50, 58
AluI AGCT 2 cut(s) 50, 58
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 33
AxyI CCTNAGG 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 269, 302
BbvI GCAGC 1 cut(s) 45
BccI CCATC 3 cut(s) 23, 325, 329
BceAI ACGGC 1 cut(s) 329
BisI GCNGC 2 cut(s) 34, 317
BlsI GCNGC 2 cut(s) 35, 318
BsaBI GATNNNNATC 1 cut(s) 201
Bse21I CCTNAGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 201
BseGI GGATG 2 cut(s) 34, 340
BseJI GATNNNNATC 1 cut(s) 201
BseMI GCAATG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 56
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 284
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 320
BsnI GGCC 1 cut(s) 319
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 2 cut(s) 146, 316
BspANI GGCC 1 cut(s) 319
BspFNI CGCG 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 300
BssMI GATC 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 2 cut(s) 34, 340
BstFNI CGCG 1 cut(s) 284
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 2 cut(s) 290, 322
BstNSI RCATGY 1 cut(s) 152
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 45
BstZI CGGCCG 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 113
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 34, 340
Csp6I GTAC 1 cut(s) 278
CviAII CATG 3 cut(s) 149, 211, 235
CviJI RGCY 8 cut(s) 50, 58, 111, 122, 257, 300, 306, 319
CviKI_1 RGCY 8 cut(s) 50, 58, 111, 122, 257, 300, 306, 319
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 317
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 317
Eco52I CGGCCG 1 cut(s) 317
Eco81I CCTNAGG 1 cut(s) 113
FaeI CATG 3 cut(s) 152, 214, 238
FaiI YATR 8 cut(s) 20, 68, 72, 150, 207, 212, 236, 248
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 3 cut(s) 148, 210, 234
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 34, 317
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 34, 317
GluI GCNGC 2 cut(s) 34, 317
HaeIII GGCC 1 cut(s) 319
Hin1II CATG 3 cut(s) 152, 214, 238
HinfI GANTC 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 244, 280
Hpy8I GTNNAC 2 cut(s) 244, 280
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 322
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 3 cut(s) 152, 214, 238
Kzo9I GATC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 147
LpnPI CCDG 2 cut(s) 264, 275
Lsp1109I GCAGC 1 cut(s) 45
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 4 cut(s) 86, 134, 197, 340
MluCI AATT 2 cut(s) 91, 97
MluI ACGCGT 1 cut(s) 282
MnlI CCTC 7 cut(s) 19, 34, 37, 151, 238, 247, 333
MseI TTAA 1 cut(s) 269
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 290, 322
NdeII GATC 1 cut(s) 202
NlaIII CATG 3 cut(s) 152, 214, 238
NspI RCATGY 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 35, 318
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 34, 317
Sau3AI GATC 1 cut(s) 202
SetI ASST 5 cut(s) 48, 52, 60, 162, 344
Sse9I AATT 2 cut(s) 91, 97
SsiI CCGC 2 cut(s) 146, 316
TaqI TCGA 2 cut(s) 101, 230
TasI AATT 2 cut(s) 91, 97
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 87, 198
XceI RCATGY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.