Rroxscaffold_3G00252450

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000787
Physical Location & Seq
Forward (+)
46459764 .. 46461089
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252450.1

Sequence Viewer

Length: 279 bp
ATGCGAATTGCGAAACCCAATTGCTCGGGGAGGTCGCGGTGGTCGGCGTTTCAATTGGCCATCGAGAACGAGGCGGGTGGCCCCGACTCGCACCCCAAGCCCGAGCAACTAGTCTTCGATGTCGTCTCCGGGTTAATCACTCCGTCGGTAAGCTTTAGCTCGTCAAGTTCTCTCCTTTTTCTGGTTAAGGACTACGACACCGCCAAAACCATCAAAGGCGACTTCAAGCCCGGCCGGGCGACCAAGTCTACTCGTAGTTGGCGAGTTGAAGGTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

9.8

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 12 - 45 8.2e-06 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 248
AccII CGCG 1 cut(s) 37
AciI CCGC 3 cut(s) 37, 74, 201
AcoI YGGCCR 2 cut(s) 57, 232
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 3 cut(s) 53, 226, 269
AhlI ACTAGT 1 cut(s) 109
AluBI AGCT 2 cut(s) 153, 159
AluI AGCT 2 cut(s) 153, 159
Alw26I GTCTC 1 cut(s) 130
Ama87I CYCGRG 2 cut(s) 25, 101
AoxI GGCC 3 cut(s) 57, 79, 232
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 3 cut(s) 130, 231, 236
AvaI CYCGRG 2 cut(s) 25, 101
BalI TGGCCA 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 106
BccI CCATC 2 cut(s) 68, 218
BcnI CCSGG 3 cut(s) 130, 231, 236
BcoDI GTCTC 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 109
BfaI CTAG 1 cut(s) 110
Bme1390I CCNGG 3 cut(s) 130, 231, 236
BmeT110I CYCGRG 2 cut(s) 25, 101
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 3 cut(s) 130, 231, 236
BpiI GAAGAC 1 cut(s) 106
BpuMI CCSGG 3 cut(s) 130, 231, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 181
BseX3I CGGCCG 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 3 cut(s) 59, 81, 234
BsiEI CGRYCG 1 cut(s) 235
BsiHKCI CYCGRG 2 cut(s) 25, 101
BsiSI CCGG 3 cut(s) 129, 231, 235
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 3 cut(s) 59, 81, 234
BsoBI CYCGRG 2 cut(s) 25, 101
BspACI CCGC 3 cut(s) 37, 74, 201
BspANI GGCC 3 cut(s) 59, 81, 234
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 82
BstFNI CGCG 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 130
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstSCI CCNGG 3 cut(s) 128, 229, 234
BstUI CGCG 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 232
BsuRI GGCC 3 cut(s) 59, 81, 234
Cfr13I GGNCC 1 cut(s) 80
CviJI RGCY 7 cut(s) 59, 81, 100, 153, 159, 229, 234
CviKI_1 RGCY 7 cut(s) 59, 81, 100, 153, 159, 229, 234
EaeI YGGCCR 2 cut(s) 57, 232
EagI CGGCCG 1 cut(s) 232
EclXI CGGCCG 1 cut(s) 232
Eco52I CGGCCG 1 cut(s) 232
Eco88I CYCGRG 2 cut(s) 25, 101
Esp3I CGTCTC 1 cut(s) 130
FauI CCCGC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 248
FspBI CTAG 1 cut(s) 110
HaeIII GGCC 3 cut(s) 59, 81, 234
HapII CCGG 3 cut(s) 129, 231, 235
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 129, 231, 235
Hpy166II GTNNAC 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 142, 167, 244, 248
MaeI CTAG 1 cut(s) 110
MboII GAAGA 1 cut(s) 106
MfeI CAATTG 2 cut(s) 19, 53
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 3 cut(s) 6, 19, 53
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 2 cut(s) 24, 64
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 134, 186
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 3 cut(s) 129, 231, 235
MspR9I CCNGG 3 cut(s) 130, 231, 236
MunI CAATTG 2 cut(s) 19, 53
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 3 cut(s) 130, 231, 236
NlaIV GGNNCC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PflFI GACNNNGTC 1 cut(s) 244
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 134, 186
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 3 cut(s) 130, 231, 236
SetI ASST 4 cut(s) 35, 155, 161, 274
SpeI ACTAGT 1 cut(s) 109
Sse9I AATT 3 cut(s) 6, 19, 53
SsiI CCGC 3 cut(s) 37, 74, 201
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 128, 229, 234
TaqI TCGA 2 cut(s) 63, 117
TasI AATT 3 cut(s) 6, 19, 53
Tru1I TTAA 2 cut(s) 134, 186
Tru9I TTAA 2 cut(s) 134, 186
TspGWI ACGGA 1 cut(s) 132
Tth111I GACNNNGTC 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.