Rh1AG134900

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000787
Physical Location & Seq
Reverse (-)
25749338 .. 25758378
9041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG134900.1

Sequence Viewer

Length: 1035 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGCCGGCTGCGGCGGCCTTCCAAGAAGGGGTCGGGTTGGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTCGAGAACCAGTGGGGTGGCCGTGAATCGCGCCTCAAGGCCGAGCAACTGGTCTCTGATATCGTCTCCTGGGTCAATTTCTCCACCGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTCTCTCAATACTGTGATAGAGGATGGTAGCATTGAAGAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAGGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCATGTTAAACAGGTTGTCAATGATGAAGAAGACAGTGACGAGGATGATGATGATACTGATCCCAGCATGAATAAAGATGATTCATCAAACATGATTGTGGACAAACCAGAGTCTCATGCAGTAGAGCCAAAGACCAAGCAGGCAGTTGAAGCGGAAGATGGTTGGGAGTCCACGGTTTTTGCGAGGCAAGATGCTTTGGAGGGAAGGCCAATTGGGACGGATTTGCTTCGCGCCACCGATGAAGTCATTTTTGATGCCACGAGCAAAGTTGATCCAGCAGTAGGAATCTCCTTTGAAAAGTCTCGGAATGACAGACGCCAGTACCGATTAATCAAGCTCGAGAATGGCCTCACTGCATTGCTAGTTCACGATCCTGAGATTGGAGAATCCCAACTCTCTGAGGGCTCTGAGGAAGACGACGATAGTGAAGGAGAGGATGAAGATGAACTGAATAAGAAAAAGGGAGGGGATTCTCGGACTAACAAGGCAGCAGCAGCAATGTGTGTAGGAATAGGCAGCTTCTCTGACCCTCCTGAGGCACAGGGGCTTGCACACTTTCTAGAACACATGCTTTTCATGGGGAGTACAGAATTTCCAGATGAAAATGAGTTAGTTACTTATCCAAGCACGGAGGGTGTTCAAATCCATATGCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

344

Amino Acids

38.22

Weight (kDa)

4.3

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 94 7e-25 Pre-rRNA-processing protein TSR2
Peptidase_M16 PF00675 284 - 339 7.6e-13 Insulinase (Peptidase family M16)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccII CGCG 3 cut(s) 73, 127, 606
AciI CCGC 4 cut(s) 35, 38, 73, 527
AclWI GGATC 3 cut(s) 428, 641, 740
AcoI YGGCCR 2 cut(s) 93, 115
AcsI RAATTY 1 cut(s) 965
AcyI GRCGYC 2 cut(s) 26, 691
AfaI GTAC 2 cut(s) 698, 961
AfiI CCNNNNNNNGG 4 cut(s) 52, 656, 755, 910
AgsI TTSAA 7 cut(s) 89, 224, 269, 335, 524, 671, 1016
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 5 cut(s) 19, 227, 278, 712, 894
AluI AGCT 5 cut(s) 19, 227, 278, 712, 894
Alw26I GTCTC 4 cut(s) 154, 166, 492, 681
AlwI GGATC 3 cut(s) 428, 641, 740
Ama87I CYCGRG 1 cut(s) 713
AoxI GGCC 6 cut(s) 39, 93, 115, 135, 581, 721
ApeKI GCWGC 5 cut(s) 32, 863, 866, 869, 891
ApoI RAATTY 1 cut(s) 965
AseI ATTAAT 1 cut(s) 704
AspLEI GCGC 4 cut(s) 28, 85, 129, 608
AvaI CYCGRG 1 cut(s) 713
AxyI CCTNAGG 2 cut(s) 341, 909
BaeI ACNNNNGTAYC 2 cut(s) 680, 713
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 782
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
BauI CACGAG 1 cut(s) 634
BbsI GAAGAC 2 cut(s) 411, 795
BbvI GCAGC 5 cut(s) 19, 875, 878, 881, 903
BccI CCATC 2 cut(s) 251, 527
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 4 cut(s) 154, 166, 492, 681
BfaI CTAG 2 cut(s) 737, 935
BfoI RGCGCY 2 cut(s) 29, 86
BisI GCNGC 7 cut(s) 33, 36, 39, 864, 867, 870, 892
BlsI GCNGC 7 cut(s) 34, 37, 40, 865, 868, 871, 893
Bme1390I CCNGG 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 713
BmiI GGNNCC 2 cut(s) 6, 27
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 556, 619
BpiI GAAGAC 2 cut(s) 411, 795
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 2 cut(s) 26, 691
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 165, 546
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 656, 755, 910
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 106, 150, 694
Bse21I CCTNAGG 2 cut(s) 341, 909
Bse3DI GCAATG 2 cut(s) 731, 879
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 165, 546
BseGI GGATG 3 cut(s) 262, 424, 817
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 4 cut(s) 52, 656, 755, 910
BseMI GCAATG 2 cut(s) 731, 879
BseMII CTCAG 4 cut(s) 741, 765, 774, 900
BseNI ACTGG 3 cut(s) 106, 150, 694
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 5 cut(s) 19, 875, 878, 881, 903
BseYI CCCAGC 1 cut(s) 437
Bsh1236I CGCG 3 cut(s) 73, 127, 606
BshFI GGCC 6 cut(s) 41, 95, 117, 137, 583, 723
BshNI GGYRCC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 713
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 4 cut(s) 52, 656, 755, 910
BsmAI GTCTC 4 cut(s) 154, 166, 492, 681
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 604
BsnI GGCC 6 cut(s) 41, 95, 117, 137, 583, 723
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 3 cut(s) 433, 646, 745
BspACI CCGC 4 cut(s) 35, 38, 73, 527
BspANI GGCC 6 cut(s) 41, 95, 117, 137, 583, 723
BspCNI CTCAG 4 cut(s) 742, 766, 775, 901
BspFNI CGCG 3 cut(s) 73, 127, 606
BspLI GGNNCC 2 cut(s) 6, 27
BspPI GGATC 3 cut(s) 428, 641, 740
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 154
BsrDI GCAATG 2 cut(s) 731, 879
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 3 cut(s) 106, 150, 694
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 165, 546
BssMI GATC 3 cut(s) 433, 646, 745
BssNI GRCGYC 2 cut(s) 26, 691
BssSI CACGAG 1 cut(s) 634
Bst2BI CACGAG 1 cut(s) 634
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 3 cut(s) 247, 410, 550
Bst6I CTCTTC 2 cut(s) 264, 355
BstACI GRCGYC 2 cut(s) 26, 691
BstC8I GCNNGC 3 cut(s) 30, 516, 924
BstDEI CTNAG 6 cut(s) 9, 341, 750, 774, 783, 909
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 262, 424, 817
BstFNI CGCG 3 cut(s) 73, 127, 606
BstH2I RGCGCY 2 cut(s) 29, 86
BstHHI GCGC 4 cut(s) 28, 85, 129, 608
BstKTI GATC 3 cut(s) 436, 649, 748
BstMAI GTCTC 4 cut(s) 154, 166, 492, 681
BstMBI GATC 3 cut(s) 433, 646, 745
BstMWI GCNNNNNNNGC 5 cut(s) 25, 32, 38, 524, 869
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 946
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 3 cut(s) 73, 127, 606
BstV1I GCAGC 5 cut(s) 19, 875, 878, 881, 903
BstV2I GAAGAC 2 cut(s) 411, 795
BstXI CCANNNNNNTGG 1 cut(s) 113
Bsu36I CCTNAGG 2 cut(s) 341, 909
BsuRI GGCC 6 cut(s) 41, 95, 117, 137, 583, 723
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 3 cut(s) 262, 424, 817
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 3 cut(s) 113, 415, 726
Cac8I GCNNGC 3 cut(s) 30, 516, 924
CfoI GCGC 4 cut(s) 28, 85, 129, 608
Cfr10I RCCGGY 1 cut(s) 28
CseI GACGC 1 cut(s) 699
Csp6I GTAC 2 cut(s) 697, 960
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 7 cut(s) 299, 377, 442, 466, 491, 943, 952
CviQI GTAC 2 cut(s) 697, 960
DdeI CTNAG 6 cut(s) 9, 341, 750, 774, 783, 909
DinI GGCGCC 1 cut(s) 27
DpnI GATC 3 cut(s) 435, 648, 747
DpnII GATC 3 cut(s) 433, 646, 745
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 2 cut(s) 264, 355
EarI CTCTTC 2 cut(s) 264, 355
Eco24I GRGCYC 1 cut(s) 782
Eco31I GGTCTC 1 cut(s) 154
Eco32I GATATC 1 cut(s) 157
Eco81I CCTNAGG 2 cut(s) 341, 909
Eco88I CYCGRG 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 782
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 7 cut(s) 302, 380, 445, 469, 494, 946, 955
FaqI GGGAC 1 cut(s) 604
FatI CATG 7 cut(s) 298, 376, 441, 465, 490, 942, 951
FauNDI CATATG 1 cut(s) 1023
Fnu4HI GCNGC 7 cut(s) 33, 36, 39, 864, 867, 870, 892
FokI GGATG 3 cut(s) 269, 431, 824
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 7 cut(s) 33, 36, 39, 864, 867, 870, 892
FspBI CTAG 2 cut(s) 737, 935
GlaI GCGC 4 cut(s) 27, 84, 128, 607
GluI GCNGC 7 cut(s) 33, 36, 39, 864, 867, 870, 892
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 2 cut(s) 29, 86
HaeIII GGCC 6 cut(s) 41, 95, 117, 137, 583, 723
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 699
HhaI GCGC 4 cut(s) 28, 85, 129, 608
Hin1I GRCGYC 2 cut(s) 26, 691
Hin1II CATG 7 cut(s) 302, 380, 445, 469, 494, 946, 955
Hin6I GCGC 4 cut(s) 26, 83, 127, 606
HinP1I GCGC 4 cut(s) 26, 83, 127, 606
HinfI GANTC 7 cut(s) 122, 455, 485, 542, 660, 761, 845
HpaII CCGG 1 cut(s) 29
Hpy166II GTNNAC 3 cut(s) 475, 546, 742
Hpy188I TCNGA 6 cut(s) 154, 681, 775, 784, 852, 901
Hpy188III TCNNGA 7 cut(s) 100, 715, 743, 749, 908, 935, 971
Hpy8I GTNNAC 3 cut(s) 475, 546, 742
Hpy99I CGWCG 2 cut(s) 101, 797
HpyAV CCTTC 4 cut(s) 44, 52, 573, 797
HpyCH4III ACNGT 3 cut(s) 247, 410, 550
HpyCH4V TGCA 6 cut(s) 298, 318, 494, 731, 926, 1027
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 32, 38, 524, 869
HpyF3I CTNAG 6 cut(s) 9, 341, 750, 774, 783, 909
Hsp92I GRCGYC 2 cut(s) 26, 691
Hsp92II CATG 7 cut(s) 302, 380, 445, 469, 494, 946, 955
HspAI GCGC 4 cut(s) 26, 83, 127, 606
KasI GGCGCC 1 cut(s) 25
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 3 cut(s) 433, 646, 745
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 5 cut(s) 19, 875, 878, 881, 903
LweI GCATC 2 cut(s) 556, 619
MaeI CTAG 2 cut(s) 737, 935
MaeIII GTNAC 2 cut(s) 410, 988
MalI GATC 3 cut(s) 435, 648, 747
MboI GATC 3 cut(s) 433, 646, 745
MboII GAAGA 9 cut(s) 221, 281, 314, 372, 413, 416, 542, 800, 827
MfeI CAATTG 2 cut(s) 89, 585
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 5 cut(s) 89, 172, 319, 585, 965
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 2 cut(s) 494, 551
Mph1103I ATGCAT 1 cut(s) 300
MroNI GCCGGC 1 cut(s) 28
MseI TTAA 2 cut(s) 381, 704
MslI CAYNNNNRTG 1 cut(s) 470
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 2 cut(s) 89, 585
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 3 cut(s) 73, 127, 606
MwoI GCNNNNNNNGC 5 cut(s) 25, 32, 38, 524, 869
NaeI GCCGGC 1 cut(s) 30
NarI GGCGCC 1 cut(s) 26
NdeI CATATG 1 cut(s) 1023
NdeII GATC 3 cut(s) 433, 646, 745
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 7 cut(s) 302, 380, 445, 469, 494, 946, 955
NlaIV GGNNCC 2 cut(s) 6, 27
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 1 cut(s) 946
PaeR7I CTCGAG 1 cut(s) 713
PcsI WCGNNNNNNNCGW 2 cut(s) 554, 697
PdiI GCCGGC 1 cut(s) 30
PfeI GAWTC 5 cut(s) 122, 455, 660, 761, 845
PkrI GCNGC 7 cut(s) 34, 37, 40, 865, 868, 871, 893
PleI GAGTC 2 cut(s) 493, 550
PluTI GGCGCC 1 cut(s) 29
PpsI GAGTC 2 cut(s) 493, 550
PshBI ATTAAT 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 6, 27
RsaI GTAC 2 cut(s) 698, 961
RsaNI GTAC 2 cut(s) 697, 960
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 2 cut(s) 381, 704
SatI GCNGC 7 cut(s) 33, 36, 39, 864, 867, 870, 892
Sau3AI GATC 3 cut(s) 433, 646, 745
SchI GAGTC 2 cut(s) 494, 551
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 782
SetI ASST 9 cut(s) 21, 190, 229, 276, 280, 329, 390, 714, 896
SfaNI GCATC 2 cut(s) 556, 619
SfoI GGCGCC 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 131, 713
SmoI CTYRAG 2 cut(s) 131, 713
Sse9I AATT 5 cut(s) 89, 172, 319, 585, 965
SsiI CCGC 4 cut(s) 35, 38, 73, 527
SspDI GGCGCC 1 cut(s) 25
SspMI CTAG 2 cut(s) 737, 935
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 247, 410, 550
TaqI TCGA 3 cut(s) 99, 358, 714
TasI AATT 5 cut(s) 89, 172, 319, 585, 965
TatI WGTACW 1 cut(s) 959
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 5 cut(s) 122, 455, 660, 761, 845
Tru1I TTAA 2 cut(s) 381, 704
Tru9I TTAA 2 cut(s) 381, 704
TscAI CASTG 3 cut(s) 113, 415, 733
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 5 cut(s) 32, 863, 866, 869, 891
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 9 cut(s) 315, 414, 447, 458, 630, 828, 834, 940, 990
TspGWI ACGGA 2 cut(s) 608, 1019
TspRI CASTG 3 cut(s) 113, 415, 733
VspI ATTAAT 1 cut(s) 704
XapI RAATTY 1 cut(s) 965
XbaI TCTAGA 1 cut(s) 934
XceI RCATGY 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 713
XspI CTAG 2 cut(s) 737, 935
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.