Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Reverse (-)

29721726 .. 29724935

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG140500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGCCTGAGAGAAAGCTAACGGCGCCGGCTGCGGCGGCCTTCCAAGAAGGGGTCGGGTTGGTTCTGTCGCGGTGGTCGGCGCTTCAATTGGCCGTCGAGAACGAGTGGGGTGGCCGTGAATCGCGCCTCAAGGCCGAGCAACTGGTCTCTGATATCGTCTCCTGGGTCAATTTCTCCACCGAACCTCTTTATATAGATGATTTAGAAGAAATGCTCATTGAAGCTATGAGTTCTCTCAATACTGTGATAGAGGATGGTAGCATTGAAGAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAGGTCTATTGAAAGCCTAAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCATGTTAAACAGGTTGTCAATGATGAAGAAGACAGTGACGAGGATGATGATGATACTGATCCCAGCATGAATAAAGATGATTCATCAAACATGATTGTGGACAAACCAGAGTCTCATGCAGTAGAGCCAAAGACCAAGCAGGCAGTTGAAGCGGAAGATGGTTGGGAGGTAGTCGGACCAAGAAGAAGTAGGGGTAAAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

193

Amino Acids

21.72

Weight (kDa)

4.38

Isoelectric Point (pI)

73.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WGG	PF10273	15 - 94	3.5e-25	Pre-rRNA-processing protein TSR2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	2 cut(s)	73, 127
AciI	CCGC	4 cut(s)	35, 38, 73, 527
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	2 cut(s)	93, 115
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	89, 224, 269, 335, 524
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	19, 227, 278
AluI	AGCT	3 cut(s)	19, 227, 278
Alw26I	GTCTC	3 cut(s)	154, 166, 492
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	4 cut(s)	39, 93, 115, 135
ApeKI	GCWGC	1 cut(s)	32
AspLEI	GCGC	3 cut(s)	28, 85, 129
AspS9I	GGNCC	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	551
AxyI	CCTNAGG	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	352, 384
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	251, 527
BceAI	ACGGC	3 cut(s)	39, 80, 102
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	3 cut(s)	154, 166, 492
BfoI	RGCGCY	2 cut(s)	29, 86
BisI	GCNGC	3 cut(s)	33, 36, 39
BlsI	GCNGC	3 cut(s)	34, 37, 40
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	6, 27
BmrFI	CCNGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	341
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	262, 424
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	437
Bsh1236I	CGCG	2 cut(s)	73, 127
BshFI	GGCC	4 cut(s)	41, 95, 117, 137
BshNI	GGYRCC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	154, 166, 492
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	41, 95, 117, 137
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	4 cut(s)	35, 38, 73, 527
BspANI	GGCC	4 cut(s)	41, 95, 117, 137
BspFNI	CGCG	2 cut(s)	73, 127
BspLI	GGNNCC	2 cut(s)	6, 27
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	433
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	247, 410
Bst6I	CTCTTC	2 cut(s)	264, 355
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	30, 516
BstDEI	CTNAG	2 cut(s)	9, 341
BstF5I	GGATG	2 cut(s)	262, 424
BstFNI	CGCG	2 cut(s)	73, 127
BstH2I	RGCGCY	2 cut(s)	29, 86
BstHHI	GCGC	3 cut(s)	28, 85, 129
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	3 cut(s)	154, 166, 492
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 32, 38, 524
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstUI	CGCG	2 cut(s)	73, 127
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	4 cut(s)	41, 95, 117, 137
BtsCI	GGATG	2 cut(s)	262, 424
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	30, 516
CfoI	GCGC	3 cut(s)	28, 85, 129
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	551
CviAII	CATG	5 cut(s)	299, 377, 442, 466, 491
DdeI	CTNAG	2 cut(s)	9, 341
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	93, 115
Eam1104I	CTCTTC	2 cut(s)	264, 355
EarI	CTCTTC	2 cut(s)	264, 355
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	551
Eco81I	CCTNAGG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	300
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	5 cut(s)	302, 380, 445, 469, 494
FaiI	YATR	9 cut(s)	195, 197, 230, 296, 300, 378, 443, 467, 492
FatI	CATG	5 cut(s)	298, 376, 441, 465, 490
Fnu4HI	GCNGC	3 cut(s)	33, 36, 39
FokI	GGATG	2 cut(s)	269, 431
Fsp4HI	GCNGC	3 cut(s)	33, 36, 39
GlaI	GCGC	3 cut(s)	27, 84, 128
GluI	GCNGC	3 cut(s)	33, 36, 39
GsaI	CCCAGC	1 cut(s)	441
HaeII	RGCGCY	2 cut(s)	29, 86
HaeIII	GGCC	4 cut(s)	41, 95, 117, 137
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	3 cut(s)	28, 85, 129
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	5 cut(s)	302, 380, 445, 469, 494
Hin6I	GCGC	3 cut(s)	26, 83, 127
HinP1I	GCGC	3 cut(s)	26, 83, 127
HinfI	GANTC	3 cut(s)	122, 455, 485
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	2 cut(s)	154, 551
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	44, 52
HpyCH4III	ACNGT	2 cut(s)	247, 410
HpyCH4V	TGCA	3 cut(s)	298, 318, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 32, 38, 524
HpyF3I	CTNAG	2 cut(s)	9, 341
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	5 cut(s)	302, 380, 445, 469, 494
HspAI	GCGC	3 cut(s)	26, 83, 127
KasI	GGCGCC	1 cut(s)	25
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	8 cut(s)	221, 281, 314, 372, 413, 416, 542, 570
MfeI	CAATTG	1 cut(s)	89
MluCI	AATT	4 cut(s)	89, 172, 319, 577
Mly113I	GGCGCC	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	7 cut(s)	140, 198, 247, 265, 384, 409, 535
Mph1103I	ATGCAT	1 cut(s)	300
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	2 cut(s)	73, 127
MwoI	GCNNNNNNNGC	4 cut(s)	25, 32, 38, 524
NaeI	GCCGGC	1 cut(s)	30
NarI	GGCGCC	1 cut(s)	26
NdeII	GATC	1 cut(s)	433
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	302, 380, 445, 469, 494
NlaIV	GGNNCC	2 cut(s)	6, 27
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	410
NsiI	ATGCAT	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	122, 455
PkrI	GCNGC	3 cut(s)	34, 37, 40
PleI	GAGTC	1 cut(s)	493
PluTI	GGCGCC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	6, 27
PspPI	GGNCC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	33, 36, 39
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	8 cut(s)	21, 190, 229, 276, 280, 329, 390, 546
SfoI	GGCGCC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	4 cut(s)	89, 172, 319, 577
SsiI	CCGC	4 cut(s)	35, 38, 73, 527
SspDI	GGCGCC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	247, 410
TaqI	TCGA	2 cut(s)	99, 358
TasI	AATT	4 cut(s)	89, 172, 319, 577
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	2 cut(s)	122, 455
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	4 cut(s)	315, 414, 447, 458
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.