Rh5AG393300

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000787
Physical Location & Seq
Forward (+)
68178948 .. 68201413
22466 bp
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UTR
Exon/CDS
Intron
Rh5AG393300.1

Sequence Viewer

Length: 291 bp
ATGACGTCCCCATGGCCAGCAGCGGCTGTGTTCCAAGAATGGGTCAGATTAATTCTGTCCTGGTGGTCGGCGCTTCAATTGGCCTTTGAGAAAGAGTGGGGTGGCCGTGACTCGCACCTCAAGACCGAGCAACTCATCTACGATATCGTCTCCTGGGTCAATCACTCCACCGTAACAGAAGCCACTGGAGGCATGACTGTGAGCCCCTCTTGGTCACGCGGAGGTGACCCAAATGCCTTTTTCAACATAGATACGATAAGCATAGTTAATTTAAGTATGGAAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

96

Amino Acids

10.82

Weight (kDa)

4.6

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 11 - 58 1.4e-11 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 23, 219
AcoI YGGCCR 2 cut(s) 14, 103
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 77, 244
AjnI CCWGG 2 cut(s) 59, 152
Alw26I GTCTC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 3 cut(s) 14, 81, 103
ApeKI GCWGC 1 cut(s) 20
AseI ATTAAT 1 cut(s) 50
AspLEI GCGC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 236
BalI TGGCCA 1 cut(s) 16
BanII GRGCYC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 2 cut(s) 61, 154
BcoDI GTCTC 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 74
BisI GCNGC 2 cut(s) 21, 24
BlsI GCNGC 2 cut(s) 22, 25
Bme1390I CCNGG 2 cut(s) 61, 154
BmrFI CCNGG 2 cut(s) 61, 154
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 11, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 2 cut(s) 61, 154
BseDI CCNNGG 2 cut(s) 11, 153
BseLI CCNNNNNNNGG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 16, 83, 105
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 3 cut(s) 16, 83, 105
Bsp1286I GDGCHC 1 cut(s) 206
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 2 cut(s) 23, 219
BspANI GGCC 3 cut(s) 16, 83, 105
BspFNI CGCG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 11, 153
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 61, 154
Bst4CI ACNGT 2 cut(s) 172, 199
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 11
BstEII GGTNACC 1 cut(s) 224
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 154
BstNI CCWGG 2 cut(s) 61, 154
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 59, 152
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 32
BsuRI GGCC 3 cut(s) 16, 83, 105
BtgI CCRYGG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 73
CviAII CATG 2 cut(s) 12, 193
CviJI RGCY 6 cut(s) 16, 26, 83, 105, 182, 204
CviKI_1 RGCY 6 cut(s) 16, 26, 83, 105, 182, 204
EaeI YGGCCR 2 cut(s) 14, 103
Eco130I CCWWGG 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 145
Eco91I GGTNACC 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 59, 152
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 2 cut(s) 15, 196
FaiI YATR 5 cut(s) 13, 194, 248, 263, 278
FatI CATG 2 cut(s) 11, 192
Fnu4HI GCNGC 2 cut(s) 21, 24
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 21, 24
GlaI GCGC 1 cut(s) 72
GluI GCNGC 2 cut(s) 21, 24
GsuI CTGGAG 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 3 cut(s) 16, 83, 105
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 15, 196
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 110
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 172, 199
HpyCH4IV ACGT 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 15, 196
HspAI GCGC 1 cut(s) 71
LpnPI CCDG 6 cut(s) 30, 46, 73, 139, 166, 171
Lsp1109I GCAGC 1 cut(s) 32
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 4 cut(s) 107, 172, 213, 224
MfeI CAATTG 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 206
MlsI TGGCCA 1 cut(s) 16
MluCI AATT 3 cut(s) 51, 77, 268
MluNI TGGCCA 1 cut(s) 16
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 4 cut(s) 128, 182, 215, 217
Mox20I TGGCCA 1 cut(s) 16
MscI TGGCCA 1 cut(s) 16
MseI TTAA 3 cut(s) 50, 267, 272
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 61, 154
MunI CAATTG 1 cut(s) 77
MvaI CCWGG 2 cut(s) 61, 154
MvnI CGCG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 11
NlaIII CATG 2 cut(s) 15, 196
NmuCI GTSAC 3 cut(s) 107, 213, 224
PkrI GCNGC 2 cut(s) 22, 25
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 59, 152
PspEI GGTNACC 1 cut(s) 224
PspGI CCWGG 2 cut(s) 59, 152
PstNI CAGNNNCTG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 3 cut(s) 50, 267, 272
SatI GCNGC 2 cut(s) 21, 24
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 61, 154
SduI GDGCHC 1 cut(s) 206
SetI ASST 3 cut(s) 8, 120, 226
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 3 cut(s) 51, 77, 268
SsiI CCGC 2 cut(s) 23, 219
StyD4I CCNGG 2 cut(s) 59, 152
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 172, 199
TaiI ACGT 1 cut(s) 8
TaqII GACCGA 1 cut(s) 140
TasI AATT 3 cut(s) 51, 77, 268
TauI GCSGC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 50, 267, 272
Tru9I TTAA 3 cut(s) 50, 267, 272
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 3 cut(s) 107, 213, 224
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 3 cut(s) 107, 213, 224
TspRI CASTG 1 cut(s) 190
VspI ATTAAT 1 cut(s) 50
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.