pycom03g02450

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000787
Physical Location & Seq
Forward (+)
1850921 .. 1851645
725 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02450.2

Sequence Viewer

Length: 201 bp
ATGGAGCCTGAGAGAAAGCTATCGGCGGAGGCTGGCTCTTTATTCCAGGAAGGTATAGGATTGGTTCTGTCTCGGTGGTCAGCGCTCCAATTGGCCGTCAAGAACGAGTGGGGCGGTCGTGACTCGCGCCGCAAAGCGGAGCAACTCGTCGCCGATATCTTCTCCTGGTTCAATCACTCCACAGCCTCTTTACATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

67

Amino Acids

7.47

Weight (kDa)

8.29

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 127
AciI CCGC 4 cut(s) 26, 114, 130, 137
AcoI YGGCCR 1 cut(s) 93
AfeI AGCGCT 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 2 cut(s) 45, 164
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 75
Aor51HI AGCGCT 1 cut(s) 84
AoxI GGCC 1 cut(s) 93
AspLEI GCGC 2 cut(s) 85, 129
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 47, 166
BcoDI GTCTC 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 47, 166
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 47, 166
BplI GAGNNNNNCTC 2 cut(s) 20, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 47, 166
BseLI CCNNNNNNNGG 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 95
BsiEI CGRYCG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 1 cut(s) 95
BspACI CCGC 4 cut(s) 26, 114, 130, 137
BspANI GGCC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 47, 166
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 127
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 129
BstMAI GTCTC 1 cut(s) 75
BstMCI CGRYCG 1 cut(s) 118
BstNI CCWGG 2 cut(s) 47, 166
BstSCI CCNGG 2 cut(s) 45, 164
BstUI CGCG 1 cut(s) 127
BsuRI GGCC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 2 cut(s) 85, 129
CviJI RGCY 6 cut(s) 7, 19, 32, 36, 95, 185
CviKI_1 RGCY 6 cut(s) 7, 19, 32, 36, 95, 185
DdeI CTNAG 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 93
EciI GGCGGA 1 cut(s) 41
Eco32I GATATC 1 cut(s) 157
Eco47III AGCGCT 1 cut(s) 84
EcoRII CCWGG 2 cut(s) 45, 164
EcoRV GATATC 1 cut(s) 157
FaiI YATR 2 cut(s) 56, 195
Fnu4HI GCNGC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 130
GlaI GCGC 2 cut(s) 84, 128
GluI GCNGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 1 cut(s) 95
HhaI GCGC 2 cut(s) 85, 129
Hin6I GCGC 2 cut(s) 83, 127
HinP1I GCGC 2 cut(s) 83, 127
HinfI GANTC 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 100, 119
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 9
HspAI GCGC 2 cut(s) 83, 127
LmnI GCTCC 3 cut(s) 4, 90, 139
LpnPI CCDG 6 cut(s) 18, 21, 32, 59, 151, 178
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 1 cut(s) 151
MfeI CAATTG 1 cut(s) 89
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 22, 196
MspR9I CCNGG 2 cut(s) 47, 166
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 2 cut(s) 47, 166
MvnI CGCG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 45, 164
PspGI CCWGG 2 cut(s) 45, 164
PspN4I GGNNCC 1 cut(s) 6
SatI GCNGC 1 cut(s) 130
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 47, 166
SetI ASST 2 cut(s) 21, 55
Sse9I AATT 1 cut(s) 89
SsiI CCGC 4 cut(s) 26, 114, 130, 137
StyD4I CCNGG 2 cut(s) 45, 164
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 132
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.