Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Reverse (-)

29287049 .. 29289329

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G337800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAAGCTGAGAGAAAGCTGTCGGTGGAGGCAGAGGCGATATTCAGAGAAGGCGTAGTATTGGTTCTGTCTCGGTGGTCGGCGCTCCAATTGGCCGTCGACAACGAGTGGGGCGGCCGTGACTCGCGCCGCAAATCGGAGCAACTCGCCGCCGACGTCTTCTCCTGGTTCACTCAGTCTAAAGAGGTTCTTTACATAGATGACTTAGAAGATATTCTGAATGAAGCTATGCTTTCTCTTAATACCGTGACAGAGGATGGCAGCATTGAGGAGGTAGCTGAAAAGTTAATGTTTATGAACGAAGAATGTTTGAATGGTGATTTCAAGTCTGTTGAAAGCCTAAGAGAAGCCAATCATCGAAGAGTTGCTCTTCCTCATGTTAAACAGGTGAATGACGATGACGATGACGATGACAATGACAACAATGAAAGAGATGATACCCTCGAGAATGATGGTCCGTCAAACATGATGGTGGACACACCAGAGTCCCAGTCAAATTCAAATCCAGTAGACATGACAGACAATAAACCAACTCCCAAGCCGGCTAAAACAGAAGATGGATGGGAAGTAGTTGGACCAAGGCGTAGTAAGGGTAAAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

202

Amino Acids

22.77

Weight (kDa)

4.37

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccI	GTMKAC	2 cut(s)	99, 510
AccII	CGCG	1 cut(s)	127
AciI	CCGC	3 cut(s)	114, 130, 150
AcoI	YGGCCR	2 cut(s)	93, 115
AcsI	RAATTY	1 cut(s)	496
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	313, 325, 335, 501
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	8, 19, 227, 278
AluI	AGCT	4 cut(s)	8, 19, 227, 278
Alw26I	GTCTC	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	93, 115
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	496
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	85, 129
AspS9I	GGNCC	2 cut(s)	455, 575
AsuHPI	GGTGA	2 cut(s)	329, 400
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	455, 575
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	5 cut(s)	251, 446, 463, 551, 555
BceAI	ACGGC	2 cut(s)	80, 102
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	4 cut(s)	115, 130, 150, 262
BlsI	GCNGC	4 cut(s)	116, 131, 151, 263
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	455, 575
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	455, 575
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	578
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	490, 506
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	262, 566
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	490, 506
BseRI	GAGGAG	1 cut(s)	284
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	95, 117
BsiEI	CGRYCG	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	95, 117
BsoBI	CYCGRG	1 cut(s)	443
BspACI	CCGC	3 cut(s)	114, 130, 150
BspANI	GGCC	2 cut(s)	95, 117
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	490, 506
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	578
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	355, 375
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	9, 174, 205, 341
BstF5I	GGATG	2 cut(s)	262, 566
BstFNI	CGCG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 129
BstMAI	GTCTC	1 cut(s)	75
BstMCI	CGRYCG	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	151
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	95, 117
BtsCI	GGATG	2 cut(s)	262, 566
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	2 cut(s)	85, 129
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	455, 575
CviAII	CATG	3 cut(s)	377, 466, 514
DdeI	CTNAG	4 cut(s)	9, 174, 205, 341
EaeI	YGGCCR	2 cut(s)	93, 115
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	355, 375
EarI	CTCTTC	2 cut(s)	355, 375
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	578
Eco47I	GGWCC	2 cut(s)	455, 575
Eco52I	CGGCCG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	3 cut(s)	380, 469, 517
FaiI	YATR	6 cut(s)	197, 230, 296, 378, 467, 515
FalI	AAGNNNNNCTT	4 cut(s)	174, 206, 216, 248
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	3 cut(s)	376, 465, 513
FblI	GTMKAC	2 cut(s)	99, 510
Fnu4HI	GCNGC	4 cut(s)	115, 130, 150, 262
FokI	GGATG	2 cut(s)	269, 573
Fsp4HI	GCNGC	4 cut(s)	115, 130, 150, 262
GlaI	GCGC	2 cut(s)	84, 128
GluI	GCNGC	4 cut(s)	115, 130, 150, 262
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	95, 117
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	2 cut(s)	85, 129
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	380, 469, 517
Hin6I	GCGC	2 cut(s)	83, 127
HinP1I	GCGC	2 cut(s)	83, 127
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	122, 485
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	2 cut(s)	329, 400
Hpy166II	GTNNAC	4 cut(s)	100, 171, 475, 511
Hpy188I	TCNGA	3 cut(s)	47, 139, 219
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	4 cut(s)	100, 171, 475, 511
Hpy99I	CGWCG	2 cut(s)	101, 158
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	156
HpyF3I	CTNAG	4 cut(s)	9, 174, 205, 341
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	380, 469, 517
HspAI	GCGC	2 cut(s)	83, 127
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	90, 139
LpnPI	CCDG	7 cut(s)	151, 178, 371, 495, 503, 519, 555
Lsp1109I	GCAGC	1 cut(s)	273
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	119, 247
MboII	GAAGA	6 cut(s)	151, 221, 314, 362, 372, 566
MfeI	CAATTG	1 cut(s)	89
MluCI	AATT	3 cut(s)	89, 496, 601
MlyI	GAGTC	2 cut(s)	116, 494
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	8 cut(s)	22, 28, 178, 247, 262, 265, 384, 452
MroNI	GCCGGC	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	3 cut(s)	240, 287, 381
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	127
NaeI	GCCGGC	1 cut(s)	543
NgoMIV	GCCGGC	1 cut(s)	541
NlaIII	CATG	3 cut(s)	380, 469, 517
NmuCI	GTSAC	2 cut(s)	119, 247
PaeR7I	CTCGAG	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	116, 131, 151, 263
PleI	GAGTC	2 cut(s)	116, 493
PpsI	GAGTC	2 cut(s)	116, 493
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	455, 575
PsrI	GAACNNNNNNTAC	2 cut(s)	48, 80
RseI	CAYNNNNRTG	1 cut(s)	470
SalI	GTCGAC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	240, 287, 381
SatI	GCNGC	4 cut(s)	115, 130, 150, 262
Sau96I	GGNCC	2 cut(s)	455, 575
SchI	GAGTC	2 cut(s)	116, 494
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	8 cut(s)	10, 21, 159, 189, 229, 276, 280, 390
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	2 cut(s)	455, 575
SlaI	CTCGAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	89, 496, 601
SsiI	CCGC	3 cut(s)	114, 130, 150
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	99, 358, 444
TasI	AATT	3 cut(s)	89, 496, 601
TauI	GCSGC	3 cut(s)	117, 132, 152
Tru1I	TTAA	3 cut(s)	240, 287, 381
Tru9I	TTAA	3 cut(s)	240, 287, 381
TseFI	GTSAC	2 cut(s)	119, 247
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	2 cut(s)	119, 247
TspDTI	ATGAA	3 cut(s)	237, 311, 441
TspGWI	ACGGA	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	455, 575
XapI	RAATTY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	443
XmiI	GTMKAC	2 cut(s)	99, 510
XmnI	GAANNNNTTC	1 cut(s)	213
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.