Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002072.1

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

114777 .. 115292

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002072.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgacatccccatggccggctaaggctgtgttccaagaatgggtccgattagttctatcgcggtggtcgacgcttcaattggtcgtcgagaacaagtggggtagccgtgattcgcgcctcaagaccgagcaactcgtcttcgatgtcctatcctgggatttcaagcccggccaggtctacctcatcatcaaggatctcgtcaccagcagcgcttctattctcgagaccttcgtgccgctcagagtcgtcatcaccagcagcgcttccattctcgagaccttcgtgccgctcagagtcgtcgggttgaaggccagtgacgtagtctttttgatcggccgggctaaggagttattatctcctgctcttcattgctttggcctcaattcccacttcatacacgtgtcgatctattattggccgtggtcaacccaagctaaccagggctggttagcgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

152

Amino Acids

17.3

Weight (kDa)

9.41

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	238, 289
AccI	GTMKAC	2 cut(s)	68, 177
AccII	CGCG	2 cut(s)	61, 115
AciI	CCGC	3 cut(s)	61, 236, 287
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	4 cut(s)	14, 169, 334, 416
AcvI	CACGTG	1 cut(s)	400
AfeI	AGCGCT	2 cut(s)	211, 262
AfiI	CCNNNNNNNGG	4 cut(s)	16, 40, 154, 343
AflIII	ACRYGT	2 cut(s)	397, 399
AgsI	TTSAA	3 cut(s)	77, 163, 307
AjnI	CCWGG	3 cut(s)	152, 171, 438
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
Alw26I	GTCTC	2 cut(s)	218, 269
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	2 cut(s)	221, 272
Aor51HI	AGCGCT	2 cut(s)	211, 262
AoxI	GGCC	6 cut(s)	14, 169, 309, 334, 376, 416
ApeKI	GCWGC	2 cut(s)	207, 258
AspLEI	GCGC	3 cut(s)	117, 212, 263
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	2 cut(s)	168, 338
AsuHPI	GGTGA	2 cut(s)	193, 244
AvaI	CYCGRG	2 cut(s)	221, 272
AvaII	GGWCC	1 cut(s)	43
BbrPI	CACGTG	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	219, 270
BceAI	ACGGC	2 cut(s)	90, 403
BciT130I	CCWGG	3 cut(s)	154, 173, 440
BcnI	CCSGG	2 cut(s)	168, 338
BcoDI	GTCTC	2 cut(s)	218, 269
BfoI	RGCGCY	2 cut(s)	213, 264
BisI	GCNGC	4 cut(s)	208, 236, 259, 287
BlsI	GCNGC	4 cut(s)	209, 237, 260, 288
Bme1390I	CCNGG	5 cut(s)	154, 168, 173, 338, 440
Bme18I	GGWCC	1 cut(s)	43
BmeT110I	CYCGRG	2 cut(s)	221, 272
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	5 cut(s)	154, 168, 173, 338, 440
BpiI	GAAGAC	1 cut(s)	130
Bpu10I	CCTNAGC	2 cut(s)	21, 342
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	168, 338
BsaAI	YACGTR	1 cut(s)	400
BsaI	GGTCTC	2 cut(s)	218, 269
BsaJI	CCNNGG	4 cut(s)	11, 153, 419, 439
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 40, 154, 343
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	3 cut(s)	154, 173, 440
BseDI	CCNNGG	4 cut(s)	11, 153, 419, 439
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	4 cut(s)	16, 40, 154, 343
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	253, 304
BseNI	ACTGG	1 cut(s)	312
BseX3I	CGGCCG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	219, 270
Bsh1236I	CGCG	2 cut(s)	61, 115
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	6 cut(s)	16, 171, 311, 336, 378, 418
BsiEI	CGRYCG	1 cut(s)	337
BsiHKCI	CYCGRG	2 cut(s)	221, 272
BsiSI	CCGG	3 cut(s)	17, 168, 337
BslI	CCNNNNNNNGG	4 cut(s)	16, 40, 154, 343
BsmAI	GTCTC	2 cut(s)	218, 269
BsnI	GGCC	6 cut(s)	16, 171, 311, 336, 378, 418
Bso31I	GGTCTC	2 cut(s)	218, 269
BsoBI	CYCGRG	2 cut(s)	221, 272
Bsp143I	GATC	3 cut(s)	193, 330, 405
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	3 cut(s)	61, 236, 287
BspANI	GGCC	6 cut(s)	16, 171, 311, 336, 378, 418
BspCNI	CTCAG	2 cut(s)	252, 303
BspFNI	CGCG	2 cut(s)	61, 115
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	369
BspTNI	GGTCTC	2 cut(s)	218, 269
BsrBI	CCGCTC	2 cut(s)	238, 289
BsrDI	GCAATG	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	4 cut(s)	11, 153, 419, 439
BssMI	GATC	3 cut(s)	193, 330, 405
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	3 cut(s)	154, 173, 440
Bst6I	CTCTTC	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	21, 239, 290, 342
BstDSI	CCRYGG	2 cut(s)	11, 419
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	2 cut(s)	61, 115
BstH2I	RGCGCY	2 cut(s)	213, 264
BstHHI	GCGC	3 cut(s)	117, 212, 263
BstKTI	GATC	3 cut(s)	196, 333, 408
BstMAI	GTCTC	2 cut(s)	218, 269
BstMBI	GATC	3 cut(s)	193, 330, 405
BstMCI	CGRYCG	1 cut(s)	337
BstNI	CCWGG	3 cut(s)	154, 173, 440
BstSCI	CCNGG	5 cut(s)	152, 166, 171, 336, 438
BstUI	CGCG	2 cut(s)	61, 115
BstV1I	GCAGC	2 cut(s)	219, 270
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BstZI	CGGCCG	1 cut(s)	334
BsuRI	GGCC	6 cut(s)	16, 171, 311, 336, 378, 418
BtgI	CCRYGG	2 cut(s)	11, 419
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	3 cut(s)	117, 212, 263
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	12
DdeI	CTNAG	4 cut(s)	21, 239, 290, 342
DpnI	GATC	3 cut(s)	195, 332, 407
DpnII	GATC	3 cut(s)	193, 330, 405
EaeI	YGGCCR	4 cut(s)	14, 169, 334, 416
EagI	CGGCCG	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EclXI	CGGCCG	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	11
Eco31I	GGTCTC	2 cut(s)	218, 269
Eco47I	GGWCC	1 cut(s)	43
Eco47III	AGCGCT	2 cut(s)	211, 262
Eco52I	CGGCCG	1 cut(s)	334
Eco72I	CACGTG	1 cut(s)	400
Eco88I	CYCGRG	2 cut(s)	221, 272
EcoRII	CCWGG	3 cut(s)	152, 171, 438
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	15
FaiI	YATR	2 cut(s)	13, 395
FatI	CATG	1 cut(s)	11
FblI	GTMKAC	2 cut(s)	68, 177
Fnu4HI	GCNGC	4 cut(s)	208, 236, 259, 287
Fsp4HI	GCNGC	4 cut(s)	208, 236, 259, 287
GlaI	GCGC	3 cut(s)	116, 211, 262
GluI	GCNGC	4 cut(s)	208, 236, 259, 287
HaeII	RGCGCY	2 cut(s)	213, 264
HaeIII	GGCC	6 cut(s)	16, 171, 311, 336, 378, 418
HapII	CCGG	3 cut(s)	17, 168, 337
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	3 cut(s)	117, 212, 263
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	3 cut(s)	115, 210, 261
HinP1I	GCGC	3 cut(s)	115, 210, 261
HincII	GTYRAC	2 cut(s)	69, 426
HindII	GTYRAC	2 cut(s)	69, 426
HinfI	GANTC	3 cut(s)	110, 243, 294
HpaII	CCGG	3 cut(s)	17, 168, 337
HphI	GGTGA	2 cut(s)	193, 244
Hpy166II	GTNNAC	3 cut(s)	69, 178, 426
Hpy188I	TCNGA	3 cut(s)	47, 242, 293
Hpy188III	TCNNGA	6 cut(s)	88, 121, 221, 223, 272, 274
Hpy8I	GTNNAC	3 cut(s)	69, 178, 426
Hpy99I	CGWCG	3 cut(s)	73, 89, 302
HpyAV	CCTTC	3 cut(s)	238, 289, 301
HpyCH4IV	ACGT	2 cut(s)	318, 399
HpyF3I	CTNAG	4 cut(s)	21, 239, 290, 342
HpySE526I	ACGT	2 cut(s)	318, 399
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	3 cut(s)	115, 210, 261
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	193, 330, 405
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	2 cut(s)	219, 270
MaeII	ACGT	2 cut(s)	318, 399
MaeIII	GTNAC	2 cut(s)	199, 314
MalI	GATC	3 cut(s)	195, 332, 407
MbiI	CCGCTC	2 cut(s)	238, 289
MboI	GATC	3 cut(s)	193, 330, 405
MboII	GAAGA	2 cut(s)	130, 356
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	2 cut(s)	77, 382
MlyI	GAGTC	2 cut(s)	252, 303
MnlI	CCTC	3 cut(s)	128, 191, 389
MroNI	GCCGGC	1 cut(s)	16
MslI	CAYNNNNRTG	2 cut(s)	10, 398
MspI	CCGG	3 cut(s)	17, 168, 337
MspR9I	CCNGG	5 cut(s)	154, 168, 173, 338, 440
MunI	CAATTG	1 cut(s)	77
MvaI	CCWGG	3 cut(s)	154, 173, 440
MvnI	CGCG	2 cut(s)	61, 115
NaeI	GCCGGC	1 cut(s)	18
NciI	CCSGG	2 cut(s)	168, 338
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	193, 330, 405
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	1 cut(s)	44
NmuCI	GTSAC	2 cut(s)	199, 314
PaeR7I	CTCGAG	2 cut(s)	221, 272
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	3 cut(s)	65, 228, 279
PdiI	GCCGGC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	209, 237, 260, 288
PleI	GAGTC	2 cut(s)	251, 302
PmaCI	CACGTG	1 cut(s)	400
PmlI	CACGTG	1 cut(s)	400
PpsI	GAGTC	2 cut(s)	251, 302
Ppu21I	YACGTR	1 cut(s)	400
Psp6I	CCWGG	3 cut(s)	152, 171, 438
PspCI	CACGTG	1 cut(s)	400
PspGI	CCWGG	3 cut(s)	152, 171, 438
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	10, 398
SalI	GTCGAC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	369
SatI	GCNGC	4 cut(s)	208, 236, 259, 287
Sau3AI	GATC	3 cut(s)	193, 330, 405
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	2 cut(s)	252, 303
ScrFI	CCNGG	5 cut(s)	154, 168, 173, 338, 440
SetI	ASST	7 cut(s)	177, 183, 230, 281, 321, 402, 436
Sfr274I	CTCGAG	2 cut(s)	221, 272
SinI	GGWCC	1 cut(s)	43
SlaI	CTCGAG	2 cut(s)	221, 272
SmiMI	CAYNNNNRTG	2 cut(s)	10, 398
SmlI	CTYRAG	3 cut(s)	119, 221, 272
SmoI	CTYRAG	3 cut(s)	119, 221, 272
Sse9I	AATT	2 cut(s)	77, 382
SsiI	CCGC	3 cut(s)	61, 236, 287
StyD4I	CCNGG	5 cut(s)	152, 166, 171, 336, 438
StyI	CCWWGG	1 cut(s)	11
TaiI	ACGT	2 cut(s)	321, 402
TaqI	TCGA	6 cut(s)	68, 87, 141, 222, 273, 404
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	77, 382
TauI	GCSGC	2 cut(s)	238, 289
TfiI	GAWTC	1 cut(s)	110
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	199, 314
TseI	GCWGC	2 cut(s)	207, 258
Tsp45I	GTSAC	2 cut(s)	199, 314
TspDTI	ATGAA	2 cut(s)	356, 382
TspRI	CASTG	1 cut(s)	319
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	43
XhoI	CTCGAG	2 cut(s)	221, 272
XmiI	GTMKAC	2 cut(s)	68, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.