Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Reverse (-)

22813394 .. 22815419

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21690.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAAGGTGAGAGAAAGCTGTCGGCGGAGGCGGTGGCGATATTCAGAGAAGGCATAGGGTTGGTTTTGTCCCGGTGGTCGGCGCTCCAATTGGCCGTCGACAACGAGTGGGGCGGCCGTGGCTCGCGCCAAAAAGCGGAGCAACTCGCGGCCGATGCCTTCTCCTGGTTCACTCAGTCTGCAGAGATTCTATACATTGATGATTTGGAAGATATTCTCAATGAAGCTATGATTTCTCTCAATACAATGATAGAGGATGGCAGCATTGAGGAGGTGGCTGAAAAGTTAATGTTTATGTATGAAGACTGTTTGACTGGCAATTTCAATTCTGTTGAAAGTTTGAGAGATGCCAATCATCGAAGAGTTGCCGTTCCTCATGTTAGACAAGAGAATGAAGATGACGACGATGATGATGACGATGACAACGAGGAAACTGATGGTTCATCAAACATGATGGTGGACACACCAGAGTCCCAGCCAAATTTGGATCCAGCAGACGCGACGAGCAGTAAACCAACTCCCAAGCCAGCAGCTAAAACAGAAGATGGATGGGAAGTAGTTGGAGCAAGACGTAATCGGGGTAAAAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

198

Amino Acids

21.97

Weight (kDa)

4.26

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	3 cut(s)	127, 149, 500
AciI	CCGC	5 cut(s)	26, 32, 114, 137, 149
AclWI	GGATC	2 cut(s)	482, 495
AcoI	YGGCCR	3 cut(s)	93, 115, 150
AcsI	RAATTY	1 cut(s)	481
AfiI	CCNNNNNNNGG	3 cut(s)	79, 136, 165
AgsI	TTSAA	2 cut(s)	325, 335
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	19, 227, 533
AluI	AGCT	3 cut(s)	19, 227, 533
AlwI	GGATC	2 cut(s)	482, 495
AoxI	GGCC	3 cut(s)	93, 115, 150
ApeKI	GCWGC	2 cut(s)	261, 530
ApoI	RAATTY	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	85, 129
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	273, 542
BccI	CCATC	5 cut(s)	251, 431, 448, 539, 543
BceAI	ACGGC	3 cut(s)	80, 102, 353
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	73
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	4 cut(s)	115, 150, 262, 531
BlsI	GCNGC	4 cut(s)	116, 151, 263, 532
Bme1390I	CCNGG	2 cut(s)	73, 166
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	2 cut(s)	73, 166
BmsI	GCATC	2 cut(s)	145, 337
BpiI	GAAGAC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 136, 165
Bse1I	ACTGG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	262, 554
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	3 cut(s)	79, 136, 165
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	284
BseX3I	CGGCCG	2 cut(s)	115, 150
BseXI	GCAGC	2 cut(s)	273, 542
BseYI	CCCAGC	1 cut(s)	474
Bsh1236I	CGCG	3 cut(s)	127, 149, 500
Bsh1285I	CGRYCG	2 cut(s)	118, 153
BshFI	GGCC	3 cut(s)	95, 117, 152
BsiEI	CGRYCG	2 cut(s)	118, 153
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	2 cut(s)	55, 457
BslI	CCNNNNNNNGG	3 cut(s)	79, 136, 165
BsmFI	GGGAC	2 cut(s)	55, 457
BsnI	GGCC	3 cut(s)	95, 117, 152
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	5 cut(s)	26, 32, 114, 137, 149
BspANI	GGCC	3 cut(s)	95, 117, 152
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	3 cut(s)	127, 149, 500
BspLI	GGNNCC	1 cut(s)	489
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	2 cut(s)	482, 495
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	125, 528
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	262, 554
BstFNI	CGCG	3 cut(s)	127, 149, 500
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 129
BstKTI	GATC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	487
BstMCI	CGRYCG	2 cut(s)	118, 153
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 155
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	71, 164
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	3 cut(s)	127, 149, 500
BstV1I	GCAGC	2 cut(s)	273, 542
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BstZI	CGGCCG	2 cut(s)	115, 150
BsuRI	GGCC	3 cut(s)	95, 117, 152
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	262, 554
Cac8I	GCNNGC	2 cut(s)	125, 528
CfoI	GCGC	2 cut(s)	85, 129
CseI	GACGC	1 cut(s)	506
CviAII	CATG	2 cut(s)	377, 451
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	3 cut(s)	93, 115, 150
EagI	CGGCCG	2 cut(s)	115, 150
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	2 cut(s)	115, 150
Eco52I	CGGCCG	2 cut(s)	115, 150
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	380, 454
FaiI	YATR	7 cut(s)	56, 193, 230, 296, 300, 378, 452
FaqI	GGGAC	2 cut(s)	55, 457
FatI	CATG	2 cut(s)	376, 450
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	4 cut(s)	115, 150, 262, 531
FokI	GGATG	2 cut(s)	269, 561
Fsp4HI	GCNGC	4 cut(s)	115, 150, 262, 531
GlaI	GCGC	2 cut(s)	84, 128
GluI	GCNGC	4 cut(s)	115, 150, 262, 531
GsaI	CCCAGC	1 cut(s)	478
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	95, 117, 152
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	2 cut(s)	85, 129
Hin1II	CATG	2 cut(s)	380, 454
Hin6I	GCGC	2 cut(s)	83, 127
HinP1I	GCGC	2 cut(s)	83, 127
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	187, 470
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	4 cut(s)	100, 171, 460, 512
Hpy188I	TCNGA	1 cut(s)	47
Hpy8I	GTNNAC	4 cut(s)	100, 171, 460, 512
Hpy99I	CGWCG	3 cut(s)	101, 407, 505
HpyAV	CCTTC	2 cut(s)	44, 169
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 155
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	2 cut(s)	380, 454
HspAI	GCGC	2 cut(s)	83, 127
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	3 cut(s)	90, 139, 563
LpnPI	CCDG	8 cut(s)	86, 151, 178, 300, 480, 488, 504, 540
Lsp1109I	GCAGC	2 cut(s)	273, 542
LweI	GCATC	2 cut(s)	145, 337
MaeII	ACGT	1 cut(s)	571
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	5 cut(s)	221, 314, 372, 407, 554
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	5 cut(s)	89, 319, 325, 481, 589
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	6 cut(s)	22, 247, 262, 265, 384, 421
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	455
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	73, 166
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	3 cut(s)	127, 149, 500
MwoI	GCNNNNNNNGC	2 cut(s)	120, 155
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	2 cut(s)	380, 454
NlaIV	GGNNCC	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	116, 151, 263, 532
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	489
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	455
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	115, 150, 262, 531
Sau3AI	GATC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	73, 166
SetI	ASST	6 cut(s)	10, 21, 229, 276, 535, 574
SfaNI	GCATC	2 cut(s)	145, 337
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	455
Sse9I	AATT	5 cut(s)	89, 319, 325, 481, 589
SsiI	CCGC	5 cut(s)	26, 32, 114, 137, 149
StyD4I	CCNGG	2 cut(s)	71, 164
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	2 cut(s)	99, 358
TasI	AATT	5 cut(s)	89, 319, 325, 481, 589
TauI	GCSGC	2 cut(s)	117, 152
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseI	GCWGC	2 cut(s)	261, 530
TspDTI	ATGAA	4 cut(s)	237, 315, 408, 432
XapI	RAATTY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.