RLG00000023831

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000787
Physical Location & Seq
Reverse (-)
28845906 .. 28847970
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023831

Sequence Viewer

Length: 390 bp
ATGGCCGACTGCGGCTGTGTTCCAATAGAATGGGTTCAATTAGTTCTGTCGCGGTGGTCGGCGCCTCAATTGGCCGTCGAGAACGAGTGGGGTGGCCATAACTCGTGCCTCAAGATTGAGCAACTCTTCCCCAATGTCATCTCCTGGGCAATTGGGGTATACTATTTAAGCTCATCCTTGCAAGAATTACACCATGGGAAGCCTTTGCTGTTTCCTTCAATCGTCACGTGGGCAAGGAGTCTTGATGATTATTATTCACCGCTGCGGGTCATGGGCTCTATTTTGGGCTCTCGCGGGAATCCTCATTTGGTTTCCCCCGTGGCGCGAGGCGAGTCCTTTCCAGCTTGGGCCGCTAGTTTAGCCCATGGTGCTTATCCTTCTTGGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

6.16

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 11 - 50 1.8e-08 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 159
AccII CGCG 3 cut(s) 52, 294, 325
AciI CCGC 6 cut(s) 12, 52, 260, 265, 294, 351
AcoI YGGCCR 3 cut(s) 3, 72, 94
AcvI CACGTG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 62
AgsI TTSAA 2 cut(s) 38, 219
AjnI CCWGG 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 2 cut(s) 171, 344
AluI AGCT 2 cut(s) 171, 344
AoxI GGCC 4 cut(s) 3, 72, 94, 348
ApeKI GCWGC 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 33
AspLEI GCGC 2 cut(s) 64, 325
AspS9I GGNCC 2 cut(s) 348, 384
AsuHPI GGTGA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 96
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 278, 290
BauI CACGAG 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 228
BbvI GCAGC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 145
BfaI CTAG 2 cut(s) 354, 388
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 3 cut(s) 13, 263, 351
BlsI GCNGC 3 cut(s) 14, 264, 352
Bme1390I CCNGG 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 2 cut(s) 348, 384
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 4 cut(s) 144, 193, 318, 364
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 4 cut(s) 144, 193, 318, 364
BseGI GGATG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 3 cut(s) 52, 294, 325
BshFI GGCC 4 cut(s) 5, 74, 96, 350
BshNI GGYRCC 1 cut(s) 61
BsnI GGCC 4 cut(s) 5, 74, 96, 350
Bsp1286I GDGCHC 2 cut(s) 278, 290
Bsp19I CCATGG 2 cut(s) 193, 364
BspACI CCGC 6 cut(s) 12, 52, 260, 265, 294, 351
BspANI GGCC 4 cut(s) 5, 74, 96, 350
BspFNI CGCG 3 cut(s) 52, 294, 325
BspLI GGNNCC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 61
BssECI CCNNGG 4 cut(s) 144, 193, 318, 364
BssNAI GTATAC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 2 cut(s) 193, 364
Bst1107I GTATAC 1 cut(s) 160
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 228
BstDSI CCRYGG 3 cut(s) 193, 318, 364
BstF5I GGATG 1 cut(s) 173
BstFNI CGCG 3 cut(s) 52, 294, 325
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 2 cut(s) 64, 325
BstMWI GCNNNNNNNGC 3 cut(s) 350, 359, 368
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 143
BstUI CGCG 3 cut(s) 52, 294, 325
BstV1I GCAGC 1 cut(s) 249
BstXI CCANNNNNNTGG 1 cut(s) 30
BstZ17I GTATAC 1 cut(s) 160
BsuRI GGCC 4 cut(s) 5, 74, 96, 350
BtgI CCRYGG 3 cut(s) 193, 318, 364
BtsCI GGATG 1 cut(s) 173
CfoI GCGC 2 cut(s) 64, 325
Cfr13I GGNCC 2 cut(s) 348, 384
CviAII CATG 3 cut(s) 194, 271, 365
DinI GGCGCC 1 cut(s) 63
EaeI YGGCCR 3 cut(s) 3, 72, 94
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 193, 364
Eco24I GRGCYC 2 cut(s) 278, 290
Eco47I GGWCC 1 cut(s) 384
Eco72I CACGTG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 193, 364
EcoT38I GRGCYC 2 cut(s) 278, 290
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 193, 364
FaeI CATG 3 cut(s) 197, 274, 368
FaiI YATR 5 cut(s) 99, 160, 195, 272, 366
FatI CATG 3 cut(s) 193, 270, 364
FauI CCCGC 2 cut(s) 258, 287
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 13, 263, 351
FokI GGATG 1 cut(s) 160
FriOI GRGCYC 2 cut(s) 278, 290
Fsp4HI GCNGC 3 cut(s) 13, 263, 351
FspBI CTAG 2 cut(s) 354, 388
GlaI GCGC 2 cut(s) 63, 324
GluI GCNGC 3 cut(s) 13, 263, 351
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 4 cut(s) 5, 74, 96, 350
HhaI GCGC 2 cut(s) 64, 325
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 197, 274, 368
Hin6I GCGC 2 cut(s) 62, 323
HinP1I GCGC 2 cut(s) 62, 323
HinfI GANTC 3 cut(s) 238, 298, 332
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 3 cut(s) 79, 112, 242
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 225, 387
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 359, 368
HpySE526I ACGT 1 cut(s) 227
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 197, 274, 368
HspAI GCGC 2 cut(s) 62, 323
KasI GGCGCC 1 cut(s) 61
LpnPI CCDG 3 cut(s) 130, 157, 354
Lsp1109I GCAGC 1 cut(s) 249
MaeI CTAG 2 cut(s) 354, 388
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 1 cut(s) 118
MfeI CAATTG 2 cut(s) 68, 150
MhlI GDGCHC 2 cut(s) 278, 290
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 4 cut(s) 38, 68, 150, 185
MluNI TGGCCA 1 cut(s) 96
Mly113I GGCGCC 1 cut(s) 62
MlyI GAGTC 2 cut(s) 247, 341
MnlI CCTC 4 cut(s) 75, 119, 312, 320
Mox20I TGGCCA 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 33
MscI TGGCCA 1 cut(s) 96
MseI TTAA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 145
MunI CAATTG 2 cut(s) 68, 150
MvaI CCWGG 1 cut(s) 145
MvnI CGCG 3 cut(s) 52, 294, 325
MwoI GCNNNNNNNGC 3 cut(s) 350, 359, 368
NarI GGCGCC 1 cut(s) 62
NcoI CCATGG 2 cut(s) 193, 364
NlaIII CATG 3 cut(s) 197, 274, 368
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 3 cut(s) 14, 264, 352
PleI GAGTC 2 cut(s) 246, 340
PluTI GGCGCC 1 cut(s) 65
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
PpsI GAGTC 2 cut(s) 246, 340
Ppu21I YACGTR 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 143
PspCI CACGTG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 348, 384
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 3 cut(s) 13, 263, 351
Sau96I GGNCC 2 cut(s) 348, 384
SchI GAGTC 2 cut(s) 247, 341
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 2 cut(s) 278, 290
SetI ASST 4 cut(s) 173, 230, 346, 389
SfoI GGCGCC 1 cut(s) 63
SinI GGWCC 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 4 cut(s) 38, 68, 150, 185
SsiI CCGC 6 cut(s) 12, 52, 260, 265, 294, 351
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 2 cut(s) 354, 388
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 2 cut(s) 193, 364
TaiI ACGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 78
TasI AATT 4 cut(s) 38, 68, 150, 185
TauI GCSGC 2 cut(s) 15, 353
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 2 cut(s) 354, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.