Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Reverse (-)

57729543 .. 57729999

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACATCCCCATGGCCGGCTGCTGCTGTGTTCCCAAAATGGGTCCGATTACTTCTATTGCGGTGGTCGACGCTTCAATTGGCCATTGAGAACGACTGGGGTAGCCGTGACTCGCGCCTCAAGACCGAGCAACTCGTAAGCTTTAACTCATCAAGTTCTCTCCTCTTTCTGGTCATGGATTTCAAGCTCGGCCAGGTCTACCTCATCATCAAGGACCTTGTCACCAGCAGCACTTCCATTCTTGAGACCTTCATGCCGCTCAGAGTTGTCGGGTTGAAGGTCAATGACGCTGTCGTTTTGATCGGCCGGGCTAAGGAGTTGCTATCTCCTACTCTTCATTGCTCTGGCCTTAATTCCCACTTCATACACGTGTCGATCTATTATTGGCCTGGTCAGCCCAAGCTAACCAGGGCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

OMPdecase Pribosyltran

Protein Analysis

140

Amino Acids

15.64

Weight (kDa)

9.66

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WGG	PF10273	11 - 47	7.6e-07	Pre-rRNA-processing protein TSR2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	2 cut(s)	68, 198
AccII	CGCG	1 cut(s)	115
AciI	CCGC	2 cut(s)	61, 257
AcoI	YGGCCR	4 cut(s)	14, 81, 190, 304
AcvI	CACGTG	1 cut(s)	370
AfiI	CCNNNNNNNGG	4 cut(s)	16, 40, 169, 313
AflIII	ACRYGT	2 cut(s)	367, 369
AgsI	TTSAA	3 cut(s)	77, 184, 277
AjnI	CCWGG	3 cut(s)	192, 388, 407
AluBI	AGCT	3 cut(s)	141, 187, 403
AluI	AGCT	3 cut(s)	141, 187, 403
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	6 cut(s)	14, 81, 190, 304, 346, 386
ApeKI	GCWGC	3 cut(s)	20, 23, 228
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	43, 214
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	43, 214
BalI	TGGCCA	1 cut(s)	83
BbrPI	CACGTG	1 cut(s)	370
BbvI	GCAGC	3 cut(s)	7, 10, 240
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	3 cut(s)	194, 390, 409
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	239
BisI	GCNGC	4 cut(s)	21, 24, 229, 257
BlsI	GCNGC	4 cut(s)	22, 25, 230, 258
Bme1390I	CCNGG	4 cut(s)	194, 308, 390, 409
Bme18I	GGWCC	2 cut(s)	43, 214
BmgT120I	GGNCC	2 cut(s)	43, 214
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	4 cut(s)	194, 308, 390, 409
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	104, 263
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	11, 408
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 40, 169, 313
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	3 cut(s)	194, 390, 409
BseDI	CCNNGG	2 cut(s)	11, 408
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	4 cut(s)	16, 40, 169, 313
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	152
BseX3I	CGGCCG	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	7, 10, 240
Bsh1236I	CGCG	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	6 cut(s)	16, 83, 192, 306, 348, 388
BsiEI	CGRYCG	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	17, 307
BslI	CCNNNNNNNGG	4 cut(s)	16, 40, 169, 313
BsmAI	GTCTC	1 cut(s)	239
BsnI	GGCC	6 cut(s)	16, 83, 192, 306, 348, 388
Bso31I	GGTCTC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	300, 375
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	2 cut(s)	61, 257
BspANI	GGCC	6 cut(s)	16, 83, 192, 306, 348, 388
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	11, 408
BssMI	GATC	2 cut(s)	300, 375
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	3 cut(s)	194, 390, 409
Bst6I	CTCTTC	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	260, 312
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	303, 378
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	300, 375
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	3 cut(s)	194, 390, 409
BstSCI	CCNGG	4 cut(s)	192, 306, 388, 407
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	7, 10, 240
BstZI	CGGCCG	1 cut(s)	304
BsuRI	GGCC	6 cut(s)	16, 83, 192, 306, 348, 388
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	43, 214
CseI	GACGC	2 cut(s)	79, 296
CviAII	CATG	3 cut(s)	12, 175, 253
DdeI	CTNAG	2 cut(s)	260, 312
DpnI	GATC	2 cut(s)	302, 377
DpnII	GATC	2 cut(s)	300, 375
EaeI	YGGCCR	4 cut(s)	14, 81, 190, 304
EagI	CGGCCG	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EclXI	CGGCCG	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	43, 214
Eco52I	CGGCCG	1 cut(s)	304
Eco72I	CACGTG	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	3 cut(s)	192, 388, 407
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	3 cut(s)	15, 178, 256
FaiI	YATR	4 cut(s)	13, 176, 254, 365
FatI	CATG	3 cut(s)	11, 174, 252
FblI	GTMKAC	2 cut(s)	68, 198
Fnu4HI	GCNGC	4 cut(s)	21, 24, 229, 257
Fsp4HI	GCNGC	4 cut(s)	21, 24, 229, 257
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	4 cut(s)	21, 24, 229, 257
HaeIII	GGCC	6 cut(s)	16, 83, 192, 306, 348, 388
HapII	CCGG	2 cut(s)	17, 307
HgaI	GACGC	2 cut(s)	79, 296
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	15, 178, 256
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	17, 307
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	69, 199
Hpy188I	TCNGA	2 cut(s)	47, 263
Hpy188III	TCNNGA	2 cut(s)	121, 242
Hpy8I	GTNNAC	2 cut(s)	69, 199
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	259, 271
HpyCH4IV	ACGT	1 cut(s)	369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	2 cut(s)	260, 312
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	3 cut(s)	15, 178, 256
HspAI	GCGC	1 cut(s)	115
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	300, 375
Lsp1109I	GCAGC	3 cut(s)	7, 10, 240
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	107, 220
MalI	GATC	2 cut(s)	302, 377
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	2 cut(s)	300, 375
MboII	GAAGA	1 cut(s)	326
MfeI	CAATTG	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	77, 352
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	3 cut(s)	128, 173, 212
Mox20I	TGGCCA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	2 cut(s)	144, 351
MslI	CAYNNNNRTG	2 cut(s)	10, 368
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	2 cut(s)	17, 307
MspR9I	CCNGG	4 cut(s)	194, 308, 390, 409
MunI	CAATTG	1 cut(s)	77
MvaI	CCWGG	3 cut(s)	194, 390, 409
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	394
NaeI	GCCGGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	300, 375
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	15, 178, 256
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	107, 220
PdiI	GCCGGC	1 cut(s)	18
PflFI	GACNNNGTC	2 cut(s)	218, 290
PkrI	GCNGC	4 cut(s)	22, 25, 230, 258
PleI	GAGTC	1 cut(s)	104
PmaCI	CACGTG	1 cut(s)	370
PmlI	CACGTG	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	3 cut(s)	192, 388, 407
PspCI	CACGTG	1 cut(s)	370
PspGI	CCWGG	3 cut(s)	192, 388, 407
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	43, 214
PspPPI	RGGWCCY	1 cut(s)	214
PsyI	GACNNNGTC	2 cut(s)	218, 290
RseI	CAYNNNNRTG	2 cut(s)	10, 368
SalI	GTCGAC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	144, 351
SatI	GCNGC	4 cut(s)	21, 24, 229, 257
Sau3AI	GATC	2 cut(s)	300, 375
Sau96I	GGNCC	2 cut(s)	43, 214
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	4 cut(s)	194, 308, 390, 409
SetI	ASST	9 cut(s)	143, 189, 198, 204, 219, 251, 282, 372, 405
SinI	GGWCC	2 cut(s)	43, 214
SmiMI	CAYNNNNRTG	2 cut(s)	10, 368
SmlI	CTYRAG	2 cut(s)	119, 242
SmoI	CTYRAG	2 cut(s)	119, 242
Sse9I	AATT	2 cut(s)	77, 352
SsiI	CCGC	2 cut(s)	61, 257
StyD4I	CCNGG	4 cut(s)	192, 306, 388, 407
StyI	CCWWGG	1 cut(s)	11
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	68, 374
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	77, 352
TauI	GCSGC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	144, 351
Tru9I	TTAA	2 cut(s)	144, 351
TseFI	GTSAC	2 cut(s)	107, 220
TseI	GCWGC	3 cut(s)	20, 23, 228
Tsp45I	GTSAC	2 cut(s)	107, 220
TspDTI	ATGAA	3 cut(s)	241, 326, 352
Tth111I	GACNNNGTC	2 cut(s)	218, 290
VpaK11BI	GGWCC	2 cut(s)	43, 214
XmiI	GTMKAC	2 cut(s)	68, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.