FvH4_5g30310

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000787
Physical Location & Seq
Forward (+)
21216238 .. 21218646
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30310.t1

Sequence Viewer

Length: 579 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGGCGGCTGTGGCGGTGTTCCATGAAGGCGTCGGATTAGTTCTGTCTCGGTGGTCGGCACTTCAATTGGCTGTCGAGAACGAGTGGGGCGGCCGTGACTCGCGCCAAAAGGCCGAGCAACTCGTCTCCGATATCGTCTCCTGGGTCAATCACTCCACTGAACTTCTTTATATAGATGATTTGGAAGAAATGCTCAACGAAGCTATGCTTTCTCTGAATACTATGACAGAGGATGGTAGCATTGAGGAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAAGTCCATTGAAAGCCTAAGGGAAGCCAATAGTCAAAGAGTTCCTACTCATGTTAAACAGGTTGTGGATGATGACGAAGATAGTGATGATGACGATGATGTTACTGTTCCTAGCATGACTAGAAATGATTCATCAAACATGGTTGTGGACGAACCAGAGTCTCATGCAAGAGAGCCAAAGACCAAGCAGGCAGTTGAAGCAGAAGATGGTTGGGAGGTAGTTGGACCTAGAAAAAGTAGGGGTAAAAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

193

Amino Acids

21.63

Weight (kDa)

4.43

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 94 2.6e-25 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 127
AciI CCGC 4 cut(s) 26, 29, 38, 114
AcoI YGGCCR 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 54
AgsI TTSAA 4 cut(s) 89, 325, 335, 521
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 3 cut(s) 19, 227, 278
AluI AGCT 3 cut(s) 19, 227, 278
Alw26I GTCTC 4 cut(s) 75, 154, 166, 489
AoxI GGCC 2 cut(s) 115, 135
Asp700I GAANNNNTTC 1 cut(s) 451
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 548
AvaII GGWCC 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 341
BccI CCATC 2 cut(s) 251, 524
BceAI ACGGC 2 cut(s) 39, 102
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 4 cut(s) 75, 154, 166, 489
BfaI CTAG 3 cut(s) 435, 444, 552
BisI GCNGC 3 cut(s) 27, 30, 115
BlsI GCNGC 3 cut(s) 28, 31, 116
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 165
Bse21I CCTNAGG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 262, 397
BseRI GAGGAG 1 cut(s) 284
BseX3I CGGCCG 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 2 cut(s) 117, 137
BsiEI CGRYCG 1 cut(s) 118
BsmAI GTCTC 4 cut(s) 75, 154, 166, 489
BsmBI CGTCTC 2 cut(s) 154, 166
BsnI GGCC 2 cut(s) 117, 137
BspACI CCGC 4 cut(s) 26, 29, 38, 114
BspANI GGCC 2 cut(s) 117, 137
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 2 cut(s) 9, 341
BstF5I GGATG 2 cut(s) 262, 397
BstFNI CGCG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 129
BstMAI GTCTC 4 cut(s) 75, 154, 166, 489
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 35, 521
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 127
BstZI CGGCCG 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 2 cut(s) 117, 137
BtsCI GGATG 2 cut(s) 262, 397
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 548
CseI GACGC 1 cut(s) 43
CviAII CATG 6 cut(s) 47, 299, 374, 439, 463, 488
DdeI CTNAG 2 cut(s) 9, 341
EaeI YGGCCR 1 cut(s) 115
EagI CGGCCG 1 cut(s) 115
EclXI CGGCCG 1 cut(s) 115
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 548
Eco52I CGGCCG 1 cut(s) 115
Eco81I CCTNAGG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 300
Esp3I CGTCTC 2 cut(s) 154, 166
FaeI CATG 6 cut(s) 50, 302, 377, 442, 466, 491
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 6 cut(s) 46, 298, 373, 438, 462, 487
Fnu4HI GCNGC 3 cut(s) 27, 30, 115
FokI GGATG 2 cut(s) 269, 404
Fsp4HI GCNGC 3 cut(s) 27, 30, 115
FspBI CTAG 3 cut(s) 435, 444, 552
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 27, 30, 115
HaeIII GGCC 2 cut(s) 117, 137
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 6 cut(s) 50, 302, 377, 442, 466, 491
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 3 cut(s) 122, 452, 482
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 3 cut(s) 59, 154, 240
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4V TGCA 3 cut(s) 298, 318, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 521
HpyF3I CTNAG 2 cut(s) 9, 341
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 6 cut(s) 50, 302, 377, 442, 466, 491
HspAI GCGC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 21, 151, 178, 368, 492, 497
MaeI CTAG 3 cut(s) 435, 444, 552
MaeIII GTNAC 2 cut(s) 119, 424
MboII GAAGA 4 cut(s) 221, 314, 413, 539
MfeI CAATTG 1 cut(s) 89
MluCI AATT 3 cut(s) 89, 319, 574
MlyI GAGTC 2 cut(s) 116, 491
MmeI TCCRAC 2 cut(s) 37, 526
MnlI CCTC 4 cut(s) 247, 262, 265, 532
Mph1103I ATGCAT 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 451
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 35, 521
NlaIII CATG 6 cut(s) 50, 302, 377, 442, 466, 491
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 3 cut(s) 28, 31, 116
PleI GAGTC 2 cut(s) 116, 490
PpsI GAGTC 2 cut(s) 116, 490
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 3 cut(s) 27, 30, 115
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 2 cut(s) 116, 491
ScrFI CCNGG 1 cut(s) 166
SetI ASST 7 cut(s) 21, 229, 276, 280, 387, 543, 553
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 467
Sse9I AATT 3 cut(s) 89, 319, 574
SsiI CCGC 4 cut(s) 26, 29, 38, 114
SspMI CTAG 3 cut(s) 435, 444, 552
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 99
TasI AATT 3 cut(s) 89, 319, 574
TauI GCSGC 3 cut(s) 29, 32, 117
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 63, 315, 444
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 3 cut(s) 435, 444, 552
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.