Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006814.1

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

9344 .. 10009

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006814.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ctgaggtcaaagcatgaaaagcaggagataataactcagcttggttgcatagacctccacctctcctcatcgtctcctacccatctcctctgccaaatctctcaaaccagaatcgccgccttcccctcctccacccgctgcgacgtcatctgcagtgtccctacacccccctccccgtcgccacctgcatcagcgtctcccatgacatcctcatggccgactgcgactgtgttccaagaatgggtccgattagttctattgcggtggtcgacgcttcaattggtcgtcgagaacgagtggggtagccgtgactcgagcctcaagaccgagcaactcgtctccgatgtcgtctcttgggatttcaagcccaaccaggtctacctcatcatcaaggacctcgtcaccagcagcccttgcattctcgagaccttcgtgctgctcagagtcgtcgggttgaaggtcagtgacgctgtcgttttgatcggccgggctaaggagttgttatctcctgctcttcattgctttggcctcatttcccacttcatacacgtgtcaatgtattattggtcctggtcagcccaagctaaccagggctggttagcgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

OMPdecase Pribosyltran

Protein Analysis

202

Amino Acids

22.52

Weight (kDa)

7.8

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	193
AccI	GTMKAC	2 cut(s)	269, 378
AciI	CCGC	3 cut(s)	117, 136, 262
AcoI	YGGCCR	2 cut(s)	215, 484
AcvI	CACGTG	1 cut(s)	550
AcyI	GRCGYC	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	241, 493
AflIII	ACRYGT	2 cut(s)	547, 549
AgsI	TTSAA	3 cut(s)	278, 364, 457
AjnI	CCWGG	3 cut(s)	372, 569, 588
AluBI	AGCT	2 cut(s)	40, 584
AluI	AGCT	2 cut(s)	40, 584
Alw26I	GTCTC	5 cut(s)	78, 201, 343, 355, 419
Ama87I	CYCGRG	2 cut(s)	313, 422
AoxI	GGCC	3 cut(s)	215, 484, 526
ApeKI	GCWGC	3 cut(s)	138, 408, 436
AspS9I	GGNCC	3 cut(s)	244, 394, 567
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	394
AvaI	CYCGRG	2 cut(s)	313, 422
AvaII	GGWCC	3 cut(s)	244, 394, 567
BbrPI	CACGTG	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	125, 420, 423
BccI	CCATC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	3 cut(s)	374, 571, 590
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	5 cut(s)	78, 201, 343, 355, 419
BfmI	CTRYAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	4 cut(s)	117, 139, 409, 437
BlsI	GCNGC	4 cut(s)	118, 140, 410, 438
Bme1390I	CCNGG	4 cut(s)	374, 488, 571, 590
Bme18I	GGWCC	3 cut(s)	244, 394, 567
BmeT110I	CYCGRG	2 cut(s)	313, 422
BmgT120I	GGNCC	3 cut(s)	244, 394, 567
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	4 cut(s)	374, 488, 571, 590
BmsI	GCATC	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	550
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 493
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	374, 571, 590
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	2 cut(s)	241, 493
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	50, 454
BseRI	GAGGAG	3 cut(s)	55, 77, 118
BseX3I	CGGCCG	1 cut(s)	484
BseXI	GCAGC	3 cut(s)	125, 420, 423
Bsh1285I	CGRYCG	1 cut(s)	487
BshFI	GGCC	3 cut(s)	217, 486, 528
BsiEI	CGRYCG	1 cut(s)	487
BsiHKCI	CYCGRG	2 cut(s)	313, 422
BsiSI	CCGG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	241, 493
BsmAI	GTCTC	5 cut(s)	78, 201, 343, 355, 419
BsmBI	CGTCTC	4 cut(s)	78, 201, 343, 355
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	3 cut(s)	217, 486, 528
Bso31I	GGTCTC	1 cut(s)	419
BsoBI	CYCGRG	2 cut(s)	313, 422
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	3 cut(s)	117, 136, 262
BspANI	GGCC	3 cut(s)	217, 486, 528
BspCNI	CTCAG	2 cut(s)	49, 453
BspLI	GGNNCC	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	155
BspMI	ACCTGC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	519
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	1 cut(s)	480
BssNI	GRCGYC	1 cut(s)	144
Bst2UI	CCWGG	3 cut(s)	374, 571, 590
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	550
BstDEI	CTNAG	4 cut(s)	2, 36, 440, 492
BstF5I	GGATG	1 cut(s)	206
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	5 cut(s)	78, 201, 343, 355, 419
BstMBI	GATC	1 cut(s)	480
BstMCI	CGRYCG	1 cut(s)	487
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 414
BstNI	CCWGG	3 cut(s)	374, 571, 590
BstSCI	CCNGG	4 cut(s)	372, 486, 569, 588
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	125, 420, 423
BstZI	CGGCCG	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	217, 486, 528
BtsCI	GGATG	1 cut(s)	206
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 469
BveI	ACCTGC	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	244, 394, 567
CseI	GACGC	3 cut(s)	183, 280, 476
CsiI	ACCWGGT	1 cut(s)	372
CviAII	CATG	3 cut(s)	14, 202, 213
DdeI	CTNAG	4 cut(s)	2, 36, 440, 492
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
EaeI	YGGCCR	2 cut(s)	215, 484
EagI	CGGCCG	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
EclXI	CGGCCG	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	3 cut(s)	244, 394, 567
Eco52I	CGGCCG	1 cut(s)	484
Eco72I	CACGTG	1 cut(s)	550
Eco88I	CYCGRG	2 cut(s)	313, 422
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	3 cut(s)	372, 569, 588
Esp3I	CGTCTC	4 cut(s)	78, 201, 343, 355
FaeI	CATG	3 cut(s)	17, 205, 216
FaiI	YATR	5 cut(s)	15, 50, 203, 214, 545
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	3 cut(s)	13, 201, 212
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	2 cut(s)	269, 378
Fnu4HI	GCNGC	4 cut(s)	117, 139, 409, 437
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	4 cut(s)	117, 139, 409, 437
GluI	GCNGC	4 cut(s)	117, 139, 409, 437
HaeIII	GGCC	3 cut(s)	217, 486, 528
HapII	CCGG	1 cut(s)	487
HgaI	GACGC	3 cut(s)	183, 280, 476
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	17, 205, 216
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	111, 311, 444
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	270, 379
Hpy188I	TCNGA	3 cut(s)	248, 343, 443
Hpy188III	TCNNGA	4 cut(s)	289, 322, 422, 424
Hpy8I	GTNNAC	2 cut(s)	270, 379
Hpy99I	CGWCG	5 cut(s)	146, 181, 274, 290, 452
HpyAV	CCTTC	3 cut(s)	130, 439, 451
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	144, 549
HpyCH4V	TGCA	4 cut(s)	48, 153, 188, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 414
HpyF3I	CTNAG	4 cut(s)	2, 36, 440, 492
HpySE526I	ACGT	2 cut(s)	144, 549
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	17, 205, 216
Kzo9I	GATC	1 cut(s)	480
LguI	GCTCTTC	1 cut(s)	519
Lsp1109I	GCAGC	3 cut(s)	125, 420, 423
LweI	GCATC	1 cut(s)	197
MabI	ACCWGGT	1 cut(s)	372
MaeII	ACGT	2 cut(s)	144, 549
MaeIII	GTNAC	3 cut(s)	308, 400, 464
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	1 cut(s)	506
MfeI	CAATTG	1 cut(s)	278
MluCI	AATT	1 cut(s)	278
MlyI	GAGTC	2 cut(s)	305, 453
MslI	CAYNNNNRTG	2 cut(s)	211, 548
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	4 cut(s)	374, 488, 571, 590
MunI	CAATTG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	417
MvaI	CCWGG	3 cut(s)	374, 571, 590
MwoI	GCNNNNNNNGC	2 cut(s)	19, 414
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	3 cut(s)	17, 205, 216
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	3 cut(s)	308, 400, 464
PaeR7I	CTCGAG	2 cut(s)	313, 422
PaqCI	CACCTGC	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 429
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	111
PflFI	GACNNNGTC	2 cut(s)	398, 470
PkrI	GCNGC	4 cut(s)	118, 140, 410, 438
PleI	GAGTC	2 cut(s)	305, 452
PmaCI	CACGTG	1 cut(s)	550
PmlI	CACGTG	1 cut(s)	550
PpsI	GAGTC	2 cut(s)	305, 452
Ppu21I	YACGTR	1 cut(s)	550
PpuMI	RGGWCCY	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	394
Psp6I	CCWGG	3 cut(s)	372, 569, 588
PspCI	CACGTG	1 cut(s)	550
PspGI	CCWGG	3 cut(s)	372, 569, 588
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	3 cut(s)	244, 394, 567
PspPPI	RGGWCCY	1 cut(s)	394
PspXI	VCTCGAGB	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	155
PsyI	GACNNNGTC	2 cut(s)	398, 470
RseI	CAYNNNNRTG	2 cut(s)	211, 548
SalI	GTCGAC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	519
SatI	GCNGC	4 cut(s)	117, 139, 409, 437
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	3 cut(s)	244, 394, 567
SchI	GAGTC	2 cut(s)	305, 453
ScrFI	CCNGG	4 cut(s)	374, 488, 571, 590
SexAI	ACCWGGT	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	151
Sfr274I	CTCGAG	2 cut(s)	313, 422
SinI	GGWCC	3 cut(s)	244, 394, 567
SlaI	CTCGAG	2 cut(s)	313, 422
SmiMI	CAYNNNNRTG	2 cut(s)	211, 548
SmlI	CTYRAG	3 cut(s)	313, 320, 422
SmoI	CTYRAG	3 cut(s)	313, 320, 422
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	3 cut(s)	117, 136, 262
StyD4I	CCNGG	4 cut(s)	372, 486, 569, 588
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	147, 552
TaqI	TCGA	4 cut(s)	269, 288, 314, 423
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	1 cut(s)	278
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	111
TscAI	CASTG	2 cut(s)	160, 469
TseFI	GTSAC	3 cut(s)	308, 400, 464
TseI	GCWGC	3 cut(s)	138, 408, 436
Tsp45I	GTSAC	3 cut(s)	308, 400, 464
TspDTI	ATGAA	3 cut(s)	30, 506, 532
TspRI	CASTG	2 cut(s)	160, 469
Tth111I	GACNNNGTC	2 cut(s)	398, 470
VpaK11BI	GGWCC	3 cut(s)	244, 394, 567
XhoI	CTCGAG	2 cut(s)	313, 422
XmiI	GTMKAC	2 cut(s)	269, 378
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.