Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001187.1

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

11194 .. 11965

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001187.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgcactgtgcccaagtatacttggtggacattacttcgctaaccagccctgtgggactgaggtcaaagcatgaaaagcaggagataataactcagcttggttgcatcgacctccgcctctcctcatcgtctcctacccatctcctctgccaaatctctcaaaccagaatcaccgccttcccctcctccacccgctgcgacgtcatctgcggtgtccctacaccaccctccccgtctccacctgcatcagcgtctcccatgacatcctcatggccgactgcgactgtgttccaagaatgggtccgattagttctattgcggtggtcgacgcttcaattggtcgtcgagaacgagtggggtagccgtgactcgagcctcaagaccgagcaactcgtctccgatgtcgtctcctgggatttcaagcccagccaggtctacctcatcatcaaggacctcgtcaccagcagcccttgcattctcgagaccttcgtgctgctcagagtcgtcgggttgaaggtcagtgacgctgtcgttttgatcggccaggctaaggagttgttatctcctgttcttcattgctttggcctcaattcccacttcatacacgtgtcaatgtattattggttctggtcagcccaagctaaccagggctggttagcgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

OMPdecase Pribosyltran

Protein Analysis

221

Amino Acids

24.59

Weight (kDa)

6.99

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
AatII	GACGTC	1 cut(s)	204
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	3 cut(s)	18, 326, 435
AciI	CCGC	5 cut(s)	115, 174, 193, 210, 319
AcoI	YGGCCR	2 cut(s)	272, 541
AcvI	CACGTG	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	298, 550
AflIII	ACRYGT	2 cut(s)	604, 606
AgsI	TTSAA	3 cut(s)	335, 421, 514
AjnI	CCWGG	4 cut(s)	410, 429, 543, 645
AluBI	AGCT	2 cut(s)	97, 641
AluI	AGCT	2 cut(s)	97, 641
Alw26I	GTCTC	6 cut(s)	135, 240, 258, 400, 412, 476
Ama87I	CYCGRG	2 cut(s)	370, 479
AoxI	GGCC	3 cut(s)	272, 541, 583
ApeKI	GCWGC	3 cut(s)	195, 465, 493
AspS9I	GGNCC	2 cut(s)	301, 451
AsuHPI	GGTGA	2 cut(s)	163, 451
AvaI	CYCGRG	2 cut(s)	370, 479
AvaII	GGWCC	2 cut(s)	301, 451
BaeGI	GKGCMC	1 cut(s)	13
BbrPI	CACGTG	1 cut(s)	607
BbvI	GCAGC	3 cut(s)	182, 477, 480
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	4 cut(s)	412, 431, 545, 647
BcoDI	GTCTC	6 cut(s)	135, 240, 258, 400, 412, 476
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	3 cut(s)	196, 466, 494
BlsI	GCNGC	3 cut(s)	197, 467, 495
Bme1390I	CCNGG	4 cut(s)	412, 431, 545, 647
Bme18I	GGWCC	2 cut(s)	301, 451
BmeT110I	CYCGRG	2 cut(s)	370, 479
BmgT120I	GGNCC	2 cut(s)	301, 451
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	4 cut(s)	412, 431, 545, 647
BmsI	GCATC	2 cut(s)	114, 254
BoxI	GACNNNNGTC	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	607
BsaHI	GRCGYC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	411, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 550
Bse3DI	GCAATG	1 cut(s)	574
BseBI	CCWGG	4 cut(s)	412, 431, 545, 647
BseDI	CCNNGG	2 cut(s)	411, 646
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	298, 550
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	3 cut(s)	50, 107, 511
BseRI	GAGGAG	3 cut(s)	112, 134, 175
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	3 cut(s)	182, 477, 480
BseYI	CCCAGC	1 cut(s)	425
BshFI	GGCC	3 cut(s)	274, 543, 585
BsiHKCI	CYCGRG	2 cut(s)	370, 479
BslFI	GGGAC	2 cut(s)	69, 200
BslI	CCNNNNNNNGG	2 cut(s)	298, 550
BsmAI	GTCTC	6 cut(s)	135, 240, 258, 400, 412, 476
BsmBI	CGTCTC	5 cut(s)	135, 240, 258, 400, 412
BsmFI	GGGAC	2 cut(s)	69, 200
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	3 cut(s)	274, 543, 585
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	2 cut(s)	370, 479
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	537
BspACI	CCGC	5 cut(s)	115, 174, 193, 210, 319
BspANI	GGCC	3 cut(s)	274, 543, 585
BspCNI	CTCAG	3 cut(s)	51, 106, 510
BspLI	GGNNCC	1 cut(s)	302
BspMI	ACCTGC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	411, 646
BssMI	GATC	1 cut(s)	537
BssNAI	GTATAC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	201
Bst1107I	GTATAC	1 cut(s)	19
Bst2UI	CCWGG	4 cut(s)	412, 431, 545, 647
Bst4CI	ACNGT	2 cut(s)	8, 286
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	607
BstDEI	CTNAG	4 cut(s)	59, 93, 497, 549
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	6 cut(s)	135, 240, 258, 400, 412, 476
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 471
BstNI	CCWGG	4 cut(s)	412, 431, 545, 647
BstPAI	GACNNNNGTC	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	410, 429, 543, 645
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	3 cut(s)	182, 477, 480
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstZ17I	GTATAC	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	274, 543, 585
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	2 cut(s)	4, 526
BveI	ACCTGC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	301, 451
CseI	GACGC	3 cut(s)	240, 337, 533
CviAII	CATG	3 cut(s)	71, 259, 270
DdeI	CTNAG	4 cut(s)	59, 93, 497, 549
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
EaeI	YGGCCR	2 cut(s)	272, 541
EciI	GGCGGA	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	2 cut(s)	301, 451
Eco72I	CACGTG	1 cut(s)	607
Eco88I	CYCGRG	2 cut(s)	370, 479
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	4 cut(s)	410, 429, 543, 645
Esp3I	CGTCTC	5 cut(s)	135, 240, 258, 400, 412
FaeI	CATG	3 cut(s)	74, 262, 273
FaiI	YATR	5 cut(s)	19, 72, 260, 271, 602
FaqI	GGGAC	2 cut(s)	69, 200
FatI	CATG	3 cut(s)	70, 258, 269
FauI	CCCGC	1 cut(s)	200
FblI	GTMKAC	3 cut(s)	18, 326, 435
Fnu4HI	GCNGC	3 cut(s)	196, 466, 494
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	3 cut(s)	196, 466, 494
GluI	GCNGC	3 cut(s)	196, 466, 494
GsaI	CCCAGC	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	274, 543, 585
HgaI	GACGC	3 cut(s)	240, 337, 533
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	74, 262, 273
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	3 cut(s)	168, 368, 501
HphI	GGTGA	2 cut(s)	163, 451
Hpy166II	GTNNAC	4 cut(s)	19, 28, 327, 436
Hpy188I	TCNGA	3 cut(s)	305, 400, 500
Hpy188III	TCNNGA	4 cut(s)	346, 379, 479, 481
Hpy8I	GTNNAC	4 cut(s)	19, 28, 327, 436
Hpy99I	CGWCG	4 cut(s)	203, 331, 347, 509
HpyAV	CCTTC	3 cut(s)	187, 496, 508
HpyCH4III	ACNGT	2 cut(s)	8, 286
HpyCH4IV	ACGT	2 cut(s)	201, 606
HpyCH4V	TGCA	4 cut(s)	4, 105, 245, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 471
HpyF3I	CTNAG	4 cut(s)	59, 93, 497, 549
HpySE526I	ACGT	2 cut(s)	201, 606
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	74, 262, 273
Kzo9I	GATC	1 cut(s)	537
Lsp1109I	GCAGC	3 cut(s)	182, 477, 480
LweI	GCATC	2 cut(s)	114, 254
MaeII	ACGT	2 cut(s)	201, 606
MaeIII	GTNAC	3 cut(s)	365, 457, 521
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	1 cut(s)	563
MfeI	CAATTG	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	335, 589
MlyI	GAGTC	2 cut(s)	362, 510
MslI	CAYNNNNRTG	2 cut(s)	268, 605
MspA1I	CMGCKG	1 cut(s)	195
MspR9I	CCNGG	4 cut(s)	412, 431, 545, 647
MunI	CAATTG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	4 cut(s)	412, 431, 545, 647
MwoI	GCNNNNNNNGC	2 cut(s)	76, 471
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	3 cut(s)	74, 262, 273
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	3 cut(s)	365, 457, 521
PaeR7I	CTCGAG	2 cut(s)	370, 479
PaqCI	CACCTGC	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	2 cut(s)	348, 486
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	168
PflFI	GACNNNGTC	2 cut(s)	455, 527
PkrI	GCNGC	3 cut(s)	197, 467, 495
PleI	GAGTC	2 cut(s)	362, 509
PmaCI	CACGTG	1 cut(s)	607
PmlI	CACGTG	1 cut(s)	607
PpsI	GAGTC	2 cut(s)	362, 509
Ppu21I	YACGTR	1 cut(s)	607
PpuMI	RGGWCCY	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	4 cut(s)	410, 429, 543, 645
PspCI	CACGTG	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	4 cut(s)	410, 429, 543, 645
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	2 cut(s)	301, 451
PspPPI	RGGWCCY	1 cut(s)	451
PspXI	VCTCGAGB	1 cut(s)	370
PsrI	GAACNNNNNNTAC	2 cut(s)	608, 640
PsyI	GACNNNGTC	2 cut(s)	455, 527
RseI	CAYNNNNRTG	2 cut(s)	268, 605
SalI	GTCGAC	1 cut(s)	325
SatI	GCNGC	3 cut(s)	196, 466, 494
Sau3AI	GATC	1 cut(s)	537
Sau96I	GGNCC	2 cut(s)	301, 451
SchI	GAGTC	2 cut(s)	362, 510
ScrFI	CCNGG	4 cut(s)	412, 431, 545, 647
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	114, 254
Sfr274I	CTCGAG	2 cut(s)	370, 479
SinI	GGWCC	2 cut(s)	301, 451
SlaI	CTCGAG	2 cut(s)	370, 479
SmiMI	CAYNNNNRTG	2 cut(s)	268, 605
SmlI	CTYRAG	3 cut(s)	370, 377, 479
SmoI	CTYRAG	3 cut(s)	370, 377, 479
Sse9I	AATT	2 cut(s)	335, 589
SsiI	CCGC	5 cut(s)	115, 174, 193, 210, 319
StyD4I	CCNGG	4 cut(s)	410, 429, 543, 645
TaaI	ACNGT	2 cut(s)	8, 286
TaiI	ACGT	2 cut(s)	204, 609
TaqI	TCGA	5 cut(s)	108, 326, 345, 371, 480
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	335, 589
TfiI	GAWTC	1 cut(s)	168
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	3 cut(s)	365, 457, 521
TseI	GCWGC	3 cut(s)	195, 465, 493
Tsp45I	GTSAC	3 cut(s)	365, 457, 521
TspDTI	ATGAA	3 cut(s)	87, 563, 589
TspRI	CASTG	1 cut(s)	526
Tth111I	GACNNNGTC	2 cut(s)	455, 527
VpaK11BI	GGWCC	2 cut(s)	301, 451
XhoI	CTCGAG	2 cut(s)	370, 479
XmiI	GTMKAC	3 cut(s)	18, 326, 435
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.