Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000787

Physical Location & Seq

Genomic Coordinates Forward (+)

2859855 .. 2861734

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1033000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGCCTGAGAGAAAGCTTTCGGCGGAGTCGCGGCCCATACTCCAAGAAGGTATAGGATTGGTTCTGTTTCGGTGGTCGGCGCTCCAATTGGCCGTCGAAAACGAGTGGGGCTCGTGCCGCAAAGCGGAGCAACTCGTCGCCGATATCTTCTCCTGGTTCAATCACTCCACAGGATTCAACAGGGAATTTGAGCCTTTTTACGTAGAAGATTTGGAAGATACGCCGAATAAAGCTACGCTTTCTCTCAACACTATGACAGAGGATGGCAGCATTGAGGAGGTAGCTGAAAAGCTAATGATTATGTATGAAGAATGTTTAGATTGTAATTTCAAGTCGATTGAAAGCCTAAAGGAAGCCAATCAACGAAAAGTTGCTGTTCCACATGTTAGAGAGGTTGCAAATGATGACGATGACGATAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WGG

Protein Analysis

143

Amino Acids

16.29

Weight (kDa)

4.37

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WGG	PF10273	15 - 97	2.4e-15	Pre-rRNA-processing protein TSR2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27990 AT5G27990
fragaria_vesca	FvH4_3g42701 FvH4_5g30310 FvH4_6g52702
malus_domestica	MD03G1029600.v1.1 MD04G1217800.v1.1 MD11G1033000.v1.1 MD11G1033400.v1.1 MD12G1235100.v1.1 MD12G1235200.v1.1
prunus_persica	Prupe.6G025700_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1 Prupe.6G337800_v2.0.a1
pyrus_communis	pycom03g02450 pycom03g02460 pycom04g19370 pycom11g02870 pycom12g21690
rosa_chinensis	RchiOBHm_Chr1g0319871 RchiOBHm_Chr1g0334081 RchiOBHm_Chr2g0125761 RchiOBHm_Chr4g0395011 RchiOBHm_Chr5g0025491 RchiOBHm_Chr5g0076411
rosa_laevigata	RLG00000009785 RLG00000023831 RLG00000029497 RLG00000029514 RLG00000036619
rosa_multiflora	Rmu_sc0000157.1_g000041 Rmu_sc0000369.1_g000019 Rmu_sc0001187.1_g000005 Rmu_sc0002072.1_g000030 Rmu_sc0002880.1_g000002 Rmu_sc0006814.1_g000003 Rmu_sc0014404.1_g000005 Rmu_sc0019244.1_g000001 Rmu_sc0019244.1_g000002 Rmu_ssc0000055.1_g000011
rosa_roxburghii	Rroxscaffold_2G00117740 Rroxscaffold_3G00252450 Rroxscaffold_4G00317140 Rroxscaffold_6G00406120
rosa_rugosa	Rorug01G0112100 Rorug02G0259200 Rorug02G0259200 Rorug02G0259300 Rorug05G0447800
rosa_samantha	Rh1AG134900 Rh1BG103300 Rh1CG128200 Rh1DG140500 Rh2AG317200 Rh2BG325200 Rh2CG307000 Rh2DG343200 Rh2DG491400 Rh5AG009900 Rh5AG393300 Rh5AG502700 Rh5BG524300 Rh5CG547900 Rh7BG216700 Rh7CG466700
rosa_wichuraiana	Rw1G011250 Rw2G025660 Rw5G046630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	34
AciI	CCGC	4 cut(s)	26, 34, 121, 128
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	4 cut(s)	163, 181, 334, 344
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	4 cut(s)	19, 236, 287, 295
AluI	AGCT	4 cut(s)	19, 236, 287, 295
AoxI	GGCC	2 cut(s)	35, 93
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	116
BauI	CACGAG	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	3 cut(s)	35, 121, 271
BlsI	GCNGC	3 cut(s)	36, 122, 272
Bme1390I	CCNGG	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	157
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BsaAI	YACGTR	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	37, 95
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	2 cut(s)	37, 95
Bsp1286I	GDGCHC	1 cut(s)	116
BspACI	CCGC	4 cut(s)	26, 34, 121, 128
BspANI	GGCC	2 cut(s)	37, 95
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	157
BstBAI	YACGTR	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	155
BstSNI	TACGTA	1 cut(s)	205
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	37, 95
BtsCI	GGATG	1 cut(s)	271
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	36
CviAII	CATG	1 cut(s)	386
DdeI	CTNAG	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	41
Eco105I	TACGTA	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	155
EcoRV	GATATC	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	1 cut(s)	389
FaiI	YATR	6 cut(s)	41, 56, 257, 305, 309, 387
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	35, 121, 271
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	35, 121, 271
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	3 cut(s)	35, 121, 271
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	37, 95
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	2 cut(s)	29, 177
Hpy99I	CGWCG	2 cut(s)	101, 143
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	83
LmnI	GCTCC	3 cut(s)	4, 90, 130
LpnPI	CCDG	5 cut(s)	21, 142, 159, 169, 169
Lsp1109I	GCAGC	1 cut(s)	282
MaeII	ACGT	1 cut(s)	204
MboII	GAAGA	4 cut(s)	142, 221, 230, 323
MfeI	CAATTG	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	3 cut(s)	89, 188, 328
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	256, 271, 274, 388
MroXI	GAANNNNTTC	1 cut(s)	19
MseI	TTAA	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	389
PciI	ACATGT	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	36, 122, 272
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	205
PscI	ACATGT	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	3 cut(s)	35, 121, 271
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	21, 55, 207, 238, 285, 289, 297, 399
SnaBI	TACGTA	1 cut(s)	205
Sse9I	AATT	3 cut(s)	89, 188, 328
SsiI	CCGC	4 cut(s)	26, 34, 121, 128
StyD4I	CCNGG	1 cut(s)	155
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	99, 338
TasI	AATT	3 cut(s)	89, 188, 328
TauI	GCSGC	2 cut(s)	37, 123
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	324
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.