Prupe.6G025700_v2.0.a1

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000787
Physical Location & Seq
Forward (+)
2042999 .. 2045381
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G025700.1

Sequence Viewer

Length: 612 bp
ATGGAGGCTGAGAGAAAGCTATCGGCAGAGGCTGGGTCCATACTCCAGGAAGGTATAGGATTGGTTCTGTCTCGGTGGTCAGCGCTCCAATTGGCCGTTGAGAACGAGTGGGGTGGCCGTGACTCGGGCCGGAAAGCGGAGCAACTCATCATCGATATCTTCTCCTGGTTCAATCACTCCAAAGAGCCTCTTTACATAGATGATTTAGAAGATGTGCTGAATGAAGCTATGCTTTCTCTCAACACTATGACAGAGGATGGCAGCATTGAGGAGGTTGCTGAAAAGTTAATGATTATGCATGAAGAATGTTTAGACTGTAATTTCAAGTCTATTGAAAGCCTAAGGGAAGCCAATCATCGAAGAGTTGCTGTTCCTCATGTTAGAGAGGTTGCAAATGATGACGACGATAGCGATGAAGAAAATGATGATAGAGATCATTGCATGGGAAATGATGATTCCTCAAACATGATGATGGTGGACACACCGGAGTCTCATTCAAATGTAAATGTTGTAAGCATGTTAGACAGTTATCCAAAACCCAAGCTGGCTGCCGAAGCAGAAGATGGATGGGAAGTAGTTGGACCAAGACGACACAAGGGTAGAAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

204

Amino Acids

22.97

Weight (kDa)

4.5

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 137
AcoI YGGCCR 2 cut(s) 93, 115
AfeI AGCGCT 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 124, 136
AgsI TTSAA 4 cut(s) 172, 325, 335, 498
AjnI CCWGG 2 cut(s) 45, 164
AluBI AGCT 3 cut(s) 19, 227, 544
AluI AGCT 3 cut(s) 19, 227, 544
Alw26I GTCTC 2 cut(s) 75, 495
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 124
Aor51HI AGCGCT 1 cut(s) 84
AoxI GGCC 3 cut(s) 93, 115, 127
ApeKI GCWGC 2 cut(s) 261, 548
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 3 cut(s) 36, 127, 581
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 2 cut(s) 36, 581
AxyI CCTNAGG 1 cut(s) 341
BbvI GCAGC 2 cut(s) 273, 535
BccI CCATC 4 cut(s) 251, 466, 557, 561
BceAI ACGGC 2 cut(s) 80, 102
BciT130I CCWGG 2 cut(s) 47, 166
BcoDI GTCTC 2 cut(s) 75, 495
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 2 cut(s) 262, 549
BlsI GCNGC 2 cut(s) 263, 550
Bme1390I CCNGG 2 cut(s) 47, 166
Bme18I GGWCC 2 cut(s) 36, 581
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 3 cut(s) 36, 127, 581
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 47, 166
BpmI CTGGAG 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 136
Bse21I CCTNAGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 2 cut(s) 47, 166
BseCI ATCGAT 1 cut(s) 153
BseGI GGATG 2 cut(s) 262, 572
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 124, 136
BseMI GCAATG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 273, 535
BseYI CCCAGC 1 cut(s) 32
BshFI GGCC 3 cut(s) 95, 117, 129
BshVI ATCGAT 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 130, 485
BslI CCNNNNNNNGG 2 cut(s) 124, 136
BsmAI GTCTC 2 cut(s) 75, 495
BsnI GGCC 3 cut(s) 95, 117, 129
BsoBI CYCGRG 1 cut(s) 124
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 1 cut(s) 137
BspANI GGCC 3 cut(s) 95, 117, 129
BspDI ATCGAT 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 436
BssMI GATC 1 cut(s) 433
Bst2UI CCWGG 2 cut(s) 47, 166
Bst4CI ACNGT 2 cut(s) 317, 527
Bst6I CTCTTC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 9, 341
BstF5I GGATG 2 cut(s) 262, 572
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 2 cut(s) 75, 495
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 2 cut(s) 47, 166
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 45, 164
BstV1I GCAGC 2 cut(s) 273, 535
Bsu15I ATCGAT 1 cut(s) 153
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 3 cut(s) 95, 117, 129
BsuTUI ATCGAT 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 262, 572
Cac8I GCNNGC 1 cut(s) 546
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 3 cut(s) 36, 127, 581
ClaI ATCGAT 1 cut(s) 153
CviAII CATG 5 cut(s) 299, 377, 442, 466, 517
DdeI CTNAG 2 cut(s) 9, 341
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 36, 581
Eco47III AGCGCT 1 cut(s) 84
Eco81I CCTNAGG 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 45, 164
EcoRV GATATC 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 300
FaeI CATG 5 cut(s) 302, 380, 445, 469, 520
FalI AAGNNNNNCTT 4 cut(s) 174, 206, 216, 248
FatI CATG 5 cut(s) 298, 376, 441, 465, 516
Fnu4HI GCNGC 2 cut(s) 262, 549
FokI GGATG 2 cut(s) 269, 579
Fsp4HI GCNGC 2 cut(s) 262, 549
GlaI GCGC 1 cut(s) 84
GluI GCNGC 2 cut(s) 262, 549
GsaI CCCAGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 3 cut(s) 95, 117, 129
HapII CCGG 2 cut(s) 130, 485
HhaI GCGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 302, 380, 445, 469, 520
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 3 cut(s) 122, 455, 488
HpaII CCGG 2 cut(s) 130, 485
Hpy166II GTNNAC 1 cut(s) 478
Hpy8I GTNNAC 1 cut(s) 478
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 44, 597
HpyCH4III ACNGT 2 cut(s) 317, 527
HpyCH4V TGCA 3 cut(s) 298, 392, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 2 cut(s) 9, 341
Hsp92II CATG 5 cut(s) 302, 380, 445, 469, 520
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 2 cut(s) 90, 139
LpnPI CCDG 8 cut(s) 18, 32, 59, 143, 151, 178, 498, 530
Lsp1109I GCAGC 2 cut(s) 273, 535
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 6 cut(s) 151, 221, 314, 372, 428, 572
MfeI CAATTG 1 cut(s) 89
MluCI AATT 3 cut(s) 89, 319, 607
MlyI GAGTC 2 cut(s) 116, 497
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 8 cut(s) 22, 198, 247, 262, 265, 379, 384, 469
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 1 cut(s) 287
MslI CAYNNNNRTG 2 cut(s) 470, 498
MspI CCGG 2 cut(s) 130, 485
MspR9I CCNGG 2 cut(s) 47, 166
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 2 cut(s) 47, 166
MwoI GCNNNNNNNGC 1 cut(s) 554
NdeII GATC 1 cut(s) 433
NlaIII CATG 5 cut(s) 302, 380, 445, 469, 520
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 1 cut(s) 455
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 2 cut(s) 263, 550
PleI GAGTC 2 cut(s) 116, 496
PpsI GAGTC 2 cut(s) 116, 496
Psp6I CCWGG 2 cut(s) 45, 164
PspFI CCCAGC 1 cut(s) 32
PspGI CCWGG 2 cut(s) 45, 164
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 3 cut(s) 36, 127, 581
PstNI CAGNNNCTG 1 cut(s) 32
RseI CAYNNNNRTG 2 cut(s) 470, 498
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 2 cut(s) 262, 549
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 3 cut(s) 36, 127, 581
SchI GAGTC 2 cut(s) 116, 497
ScrFI CCNGG 2 cut(s) 47, 166
SetI ASST 6 cut(s) 21, 55, 229, 276, 390, 546
SinI GGWCC 2 cut(s) 36, 581
SmiMI CAYNNNNRTG 2 cut(s) 470, 498
Sse9I AATT 3 cut(s) 89, 319, 607
SsiI CCGC 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 45, 164
TaaI ACNGT 2 cut(s) 317, 527
TaqI TCGA 2 cut(s) 153, 358
TasI AATT 3 cut(s) 89, 319, 607
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 261, 548
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 237, 315, 429
VpaK11BI GGWCC 2 cut(s) 36, 581
XceI RCATGY 1 cut(s) 520
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.