RLG00000029514

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000787
Physical Location & Seq
Forward (+)
39682052 .. 39687126
5075 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029514

Sequence Viewer

Length: 867 bp
ATGGAGCCTGAGAGAAAGCTAACGGCGGCGGCTGTGGCGGCGTTCCAAGAAGGGGTCGGGTTGGTTCTGTCGCGGTGGTCCGCGCTTCAATTGGCCGTCGAGAACGAGTGGGGTGGCCGTGAATCGCGCCTCAAGGCCGAGCAACTGGTCTCTGATATCGTCTCCTGGGTCAATTTCTCCACCGGCATGATGAGTTTTATGTCCATTTACATTGGAGATGTGACGAAGAGTGAATATTTAACTATAGGAAATTACTGTTTTATCTTTGTTTGTGTTTTTAACTTTGAATTGGCTTCGGATTTTGCACAGGTAGCTGAAAAAATAATGATTATGCATGAAGAATGTTTGGATTGCAATTTCAAGTCTATTGAAAGCCTCAGGGAAGCCAATAGTCGAAGAGTTCCTACTCCTCACGTTAAACAGGTTGTCAATGATGAAGAAGACAGTGACGAGGATGATGTTGATACTGATCCTAGCATGAATAAAGATGATTCATCAAACATGATTGTGGACAAACCAGAGTCTCATGCAGTGCCAAAGACCAAGCAGGCAGTTGAAGCGGAAGGTGGTTGGGAGTCCACGGTTTTTGCGAGGCAAGATGCTTTGGAGGGAAGGACAATTGGGACGGATTTGCTTCACGCCACCGATGAAGTCATTTGTGATGCCAGGAGCAAAGTTGATCCAGCAGTAGGAATCTCGTTTGAAAAGGTTGTGACTGGAACTAACGCCAAGGAATTATCAAGTTCTTTGGGAAGCAGCTTGTCACGCAGAATGCAGTTGTGCCATTTTAGAATAGAGCTTGGTTTACGAGCGGTAACATCGGCATTTGCACTCCTAGAAGCGAAAGGTACTTGTAGTAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

289

Amino Acids

31.77

Weight (kDa)

4.75

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 15 - 58 5.7e-14 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 812
AccII CGCG 3 cut(s) 73, 83, 127
AciI CCGC 7 cut(s) 26, 29, 38, 73, 81, 560, 812
AclWI GGATC 2 cut(s) 464, 674
AcoI YGGCCR 2 cut(s) 93, 115
AfaI GTAC 1 cut(s) 850
AfiI CCNNNNNNNGG 2 cut(s) 52, 689
AgsI TTSAA 6 cut(s) 89, 287, 361, 371, 557, 704
AjnI CCWGG 2 cut(s) 164, 665
AluBI AGCT 4 cut(s) 19, 314, 759, 799
AluI AGCT 4 cut(s) 19, 314, 759, 799
Alw26I GTCTC 3 cut(s) 154, 166, 528
AlwI GGATC 2 cut(s) 464, 674
AoxI GGCC 3 cut(s) 93, 115, 135
ApeKI GCWGC 1 cut(s) 756
AspLEI GCGC 2 cut(s) 85, 129
AspS9I GGNCC 1 cut(s) 78
AvaII GGWCC 1 cut(s) 78
AxyI CCTNAGG 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 388, 420
BbsI GAAGAC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 768
BceAI ACGGC 3 cut(s) 39, 80, 102
BciT130I CCWGG 2 cut(s) 166, 667
BcoDI GTCTC 3 cut(s) 154, 166, 528
BfaI CTAG 2 cut(s) 474, 836
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 4 cut(s) 27, 30, 39, 757
BlsI GCNGC 4 cut(s) 28, 31, 40, 758
Bme1390I CCNGG 2 cut(s) 166, 667
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 166, 667
BmsI GCATC 2 cut(s) 589, 652
BpiI GAAGAC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 165, 579, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 689
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 150, 721
Bse21I CCTNAGG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 2 cut(s) 166, 667
BseDI CCNNGG 3 cut(s) 165, 579, 729
BseGI GGATG 1 cut(s) 460
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 52, 689
BseMII CTCAG 1 cut(s) 391
BseNI ACTGG 2 cut(s) 150, 721
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 768
Bsh1236I CGCG 3 cut(s) 73, 83, 127
BshFI GGCC 3 cut(s) 95, 117, 137
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 2 cut(s) 52, 689
BsmAI GTCTC 3 cut(s) 154, 166, 528
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 3 cut(s) 95, 117, 137
Bso31I GGTCTC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 469, 679
BspACI CCGC 7 cut(s) 26, 29, 38, 73, 81, 560, 812
BspANI GGCC 3 cut(s) 95, 117, 137
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 3 cut(s) 73, 83, 127
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 464, 674
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 812
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 2 cut(s) 150, 721
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 165, 579, 729
BssMI GATC 2 cut(s) 469, 679
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 2 cut(s) 166, 667
Bst4CI ACNGT 3 cut(s) 257, 446, 583
Bst6I CTCTTC 2 cut(s) 221, 391
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 2 cut(s) 9, 377
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 3 cut(s) 73, 83, 127
BstHHI GCGC 2 cut(s) 85, 129
BstKTI GATC 2 cut(s) 472, 682
BstMAI GTCTC 3 cut(s) 154, 166, 528
BstMBI GATC 2 cut(s) 469, 679
BstMWI GCNNNNNNNGC 5 cut(s) 35, 38, 311, 557, 765
BstNI CCWGG 2 cut(s) 166, 667
BstSCI CCNGG 2 cut(s) 164, 665
BstSFI CTRYAG 1 cut(s) 243
BstUI CGCG 3 cut(s) 73, 83, 127
BstV1I GCAGC 1 cut(s) 768
BstV2I GAAGAC 1 cut(s) 447
Bsu36I CCTNAGG 1 cut(s) 377
BsuRI GGCC 3 cut(s) 95, 117, 137
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 2 cut(s) 451, 537
Cac8I GCNNGC 1 cut(s) 549
CfoI GCGC 2 cut(s) 85, 129
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 849
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 5 cut(s) 187, 335, 478, 502, 527
CviQI GTAC 1 cut(s) 849
DdeI CTNAG 2 cut(s) 9, 377
DpnI GATC 2 cut(s) 471, 681
DpnII GATC 2 cut(s) 469, 679
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 2 cut(s) 221, 391
EarI CTCTTC 2 cut(s) 221, 391
Eco130I CCWWGG 1 cut(s) 729
Eco31I GGTCTC 1 cut(s) 154
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 164, 665
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 729
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 5 cut(s) 190, 338, 481, 505, 530
FaiI YATR 8 cut(s) 188, 200, 245, 332, 336, 479, 503, 528
FaqI GGGAC 1 cut(s) 637
FatI CATG 5 cut(s) 186, 334, 477, 501, 526
Fnu4HI GCNGC 4 cut(s) 27, 30, 39, 757
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 4 cut(s) 27, 30, 39, 757
FspBI CTAG 2 cut(s) 474, 836
GlaI GCGC 2 cut(s) 84, 128
GluI GCNGC 4 cut(s) 27, 30, 39, 757
HaeIII GGCC 3 cut(s) 95, 117, 137
HapII CCGG 1 cut(s) 183
HhaI GCGC 2 cut(s) 85, 129
Hin1II CATG 5 cut(s) 190, 338, 481, 505, 530
Hin6I GCGC 2 cut(s) 83, 127
HinP1I GCGC 2 cut(s) 83, 127
HinfI GANTC 5 cut(s) 122, 491, 521, 575, 693
HpaII CCGG 1 cut(s) 183
Hpy166II GTNNAC 3 cut(s) 511, 579, 806
Hpy188I TCNGA 2 cut(s) 154, 298
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 3 cut(s) 511, 579, 806
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 44, 557, 606
HpyCH4III ACNGT 3 cut(s) 257, 446, 583
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 6 cut(s) 305, 334, 354, 530, 775, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 38, 311, 557, 765
HpyF3I CTNAG 2 cut(s) 9, 377
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 5 cut(s) 190, 338, 481, 505, 530
HspAI GCGC 2 cut(s) 83, 127
Kzo9I GATC 2 cut(s) 469, 679
LmnI GCTCC 2 cut(s) 4, 669
Lsp1109I GCAGC 1 cut(s) 768
LweI GCATC 2 cut(s) 589, 652
MaeI CTAG 2 cut(s) 474, 836
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 5 cut(s) 220, 446, 712, 762, 814
MalI GATC 2 cut(s) 471, 681
MbiI CCGCTC 1 cut(s) 812
MboI GATC 2 cut(s) 469, 679
MboII GAAGA 5 cut(s) 238, 350, 408, 449, 452
MfeI CAATTG 2 cut(s) 89, 618
MluCI AATT 8 cut(s) 89, 172, 250, 287, 355, 618, 734, 862
MlyI GAGTC 2 cut(s) 530, 584
MnlI CCTC 6 cut(s) 140, 386, 420, 445, 585, 601
Mph1103I ATGCAT 1 cut(s) 336
MseI TTAA 3 cut(s) 239, 279, 417
MslI CAYNNNNRTG 2 cut(s) 185, 506
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 2 cut(s) 166, 667
MunI CAATTG 2 cut(s) 89, 618
Mva1269I GAATGC 1 cut(s) 777
MvaI CCWGG 2 cut(s) 166, 667
MvnI CGCG 3 cut(s) 73, 83, 127
MwoI GCNNNNNNNGC 5 cut(s) 35, 38, 311, 557, 765
NdeII GATC 2 cut(s) 469, 679
NlaIII CATG 5 cut(s) 190, 338, 481, 505, 530
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 4 cut(s) 220, 446, 712, 762
NsiI ATGCAT 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 587
PctI GAATGC 1 cut(s) 777
PfeI GAWTC 3 cut(s) 122, 491, 693
PkrI GCNGC 4 cut(s) 28, 31, 40, 758
PleI GAGTC 2 cut(s) 529, 583
PpsI GAGTC 2 cut(s) 529, 583
Psp6I CCWGG 2 cut(s) 164, 665
PspGI CCWGG 2 cut(s) 164, 665
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 850
RsaNI GTAC 1 cut(s) 849
RseI CAYNNNNRTG 2 cut(s) 185, 506
SaqAI TTAA 3 cut(s) 239, 279, 417
SatI GCNGC 4 cut(s) 27, 30, 39, 757
Sau3AI GATC 2 cut(s) 469, 679
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 2 cut(s) 530, 584
ScrFI CCNGG 2 cut(s) 166, 667
SfaNI GCATC 2 cut(s) 589, 652
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 2 cut(s) 185, 506
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 8 cut(s) 89, 172, 250, 287, 355, 618, 734, 862
SsiI CCGC 7 cut(s) 26, 29, 38, 73, 81, 560, 812
SspI AATATT 1 cut(s) 236
SspMI CTAG 2 cut(s) 474, 836
StyD4I CCNGG 2 cut(s) 164, 665
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 3 cut(s) 257, 446, 583
TaiI ACGT 1 cut(s) 417
TaqI TCGA 2 cut(s) 99, 394
TasI AATT 8 cut(s) 89, 172, 250, 287, 355, 618, 734, 862
TauI GCSGC 3 cut(s) 29, 32, 41
TfiI GAWTC 3 cut(s) 122, 491, 693
Tru1I TTAA 3 cut(s) 239, 279, 417
Tru9I TTAA 3 cut(s) 239, 279, 417
TscAI CASTG 2 cut(s) 451, 537
TseFI GTSAC 4 cut(s) 220, 446, 712, 762
TseI GCWGC 1 cut(s) 756
Tsp45I GTSAC 4 cut(s) 220, 446, 712, 762
TspDTI ATGAA 5 cut(s) 351, 450, 483, 494, 663
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 2 cut(s) 451, 537
VpaK11BI GGWCC 1 cut(s) 78
XspI CTAG 2 cut(s) 474, 836
Zsp2I ATGCAT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.