RchiOBHm_Chr4g0395011

pre-rRNA-processing protein TSR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000787
Physical Location & Seq
Forward (+)
10798025 .. 10798548
524 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36748

Sequence Viewer

Length: 183 bp
ATGACATCCCCATGGCCGGCTGCGGCTGTGTTCCAAGAATGGGTCCGATTAGTTCTATCGCGGTGGTCGACGCTTCAATTGGTCATCGAGAACGAGTGGGGTAGCCGTGATTCGCGCCTCAAGACCGAGCAACTCGTCTTCGATGTCCTCTCCTGGGTCAATCACTCCACCGGTAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WGG

Protein Analysis

60

Amino Acids

7.0

Weight (kDa)

6.54

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WGG PF10273 11 - 55 2.3e-10 Pre-rRNA-processing protein TSR2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 68
AccII CGCG 2 cut(s) 61, 115
AciI CCGC 2 cut(s) 23, 61
AcoI YGGCCR 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 16, 40, 154
AgeI ACCGGT 1 cut(s) 170
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 20
AsiGI ACCGGT 1 cut(s) 170
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 7
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 154
BisI GCNGC 2 cut(s) 21, 24
BlsI GCNGC 2 cut(s) 22, 25
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 11, 153
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 40, 154
Bse118I RCCGGY 2 cut(s) 16, 170
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 11, 153
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 3 cut(s) 16, 40, 154
BseXI GCAGC 1 cut(s) 7
Bsh1236I CGCG 2 cut(s) 61, 115
BshFI GGCC 1 cut(s) 16
BshTI ACCGGT 1 cut(s) 170
BsiSI CCGG 2 cut(s) 17, 171
BslI CCNNNNNNNGG 3 cut(s) 16, 40, 154
BsnI GGCC 1 cut(s) 16
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 2 cut(s) 23, 61
BspANI GGCC 1 cut(s) 16
BspFNI CGCG 2 cut(s) 61, 115
BspLI GGNNCC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 16, 170
BssAI RCCGGY 2 cut(s) 16, 170
BssECI CCNNGG 2 cut(s) 11, 153
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 5
BstFNI CGCG 2 cut(s) 61, 115
BstHHI GCGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstUI CGCG 2 cut(s) 61, 115
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 11
BtsCI GGATG 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 2 cut(s) 16, 170
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 1 cut(s) 79
CspAI ACCGGT 1 cut(s) 170
CviAII CATG 1 cut(s) 12
CviJI RGCY 5 cut(s) 16, 20, 26, 105, 178
CviKI_1 RGCY 5 cut(s) 16, 20, 26, 105, 178
EaeI YGGCCR 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 15
FaiI YATR 1 cut(s) 13
FatI CATG 1 cut(s) 11
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 21, 24
Fsp4HI GCNGC 2 cut(s) 21, 24
GlaI GCGC 1 cut(s) 116
GluI GCNGC 2 cut(s) 21, 24
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 17, 171
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 17, 171
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 88, 121
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 73
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 1 cut(s) 115
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 30, 139, 166
Lsp1109I GCAGC 1 cut(s) 7
MboII GAAGA 1 cut(s) 130
MfeI CAATTG 1 cut(s) 77
MluCI AATT 1 cut(s) 77
MnlI CCTC 2 cut(s) 128, 158
MroNI GCCGGC 1 cut(s) 16
MseI TTAA 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 10
MspI CCGG 2 cut(s) 17, 171
MspR9I CCNGG 1 cut(s) 154
MunI CAATTG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 2 cut(s) 61, 115
NaeI GCCGGC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 11
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PdiI GCCGGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 170
PkrI GCNGC 2 cut(s) 22, 25
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 10
SalI GTCGAC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 181
SatI GCNGC 2 cut(s) 21, 24
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 154
SetI ASST 1 cut(s) 180
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 77
SsiI CCGC 2 cut(s) 23, 61
StyD4I CCNGG 1 cut(s) 152
StyI CCWWGG 1 cut(s) 11
TaqI TCGA 3 cut(s) 68, 87, 141
TaqII GACCGA 1 cut(s) 140
TasI AATT 1 cut(s) 77
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TseI GCWGC 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.